View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_9 (Length: 404)
Name: NF3320_low_9
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 6012467 - 6012094
Alignment:
| Q |
11 |
cagagataaaaaggttttaagtactatacacaagaaatattggagtaatgaaaagaatacaaagaaggaagggatggatggatggatggagaagaatgag |
110 |
Q |
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| T |
6012467 |
cagaaataaaaaggttttaagtactatacacaagaaatattggagtaatgaaaagaatacaaagaaggaagggatggatggatggatggagaagaatgag |
6012368 |
T |
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| Q |
111 |
gaaattcaatcaaataattcccacttgtcgaggatggagaatgatcaaaaggtctcccacttagttgcaacaacaacatgcttcattgtagcattagatg |
210 |
Q |
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| T |
6012367 |
gaaattcaatcaaataattcccacttgtcgaggatggagaatgatcaaaaggtctcccacttagttgtaacaacaacatgcttcattgtagcattagatg |
6012268 |
T |
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| Q |
211 |
tctttagtatatccagtgtttcaacacatttctgtactctctttccctgtaaaagcaaccattaaatgtagcttgttactaattatttcttaggactaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6012267 |
tctttagtatatccagtgtttcaacacatttctgtactctctttccctgtaaaagcaaccattaaatgtagcttgttactaattatttcttaggactaac |
6012168 |
T |
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| Q |
311 |
caaaatgataatgtacaatatatcatatgcatgctacaattaaattgtgttatacagttcaactctaataccaa |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6012167 |
caaaatgataatgtacaatatatcatatgcatgctacaattaaattgtgttatacagttcaactctaataccaa |
6012094 |
T |
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