View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321-Insertion-1 (Length: 928)
Name: NF3321-Insertion-1
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321-Insertion-1 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 724; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 8 - 881
Target Start/End: Original strand, 33199467 - 33200342
Alignment:
| Q |
8 |
aagacatttatcaatacttgagggacttaagcaagagagtaaacaaactcaaaccgcactaacnnnnnnnnnnnnn----ctcaaaccgtaatatcaaac |
103 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
33199467 |
aagacatttatcaatacttgagggactaaagcaagagagtaaacaaactcaaaccgcactaacaaaaaaaaaaaaaaaaactcaaaccgta---tcaaac |
33199563 |
T |
|
| Q |
104 |
atagaatacacagtggtgtttgaaacaaagataattaaaacatgaccgaacatcaaactggtgtactcgttggttcaaggtttgatggtttaaccgaggt |
203 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33199564 |
atagaatacagagtggtgtttgaaacaaagataattaaaacatgaccgaacatcaaactggtgtactcgttggttcaaggtttaatggtttaaccgaggt |
33199663 |
T |
|
| Q |
204 |
cttgaaccagtaataattaaataatacattttattaatttttaatatcttatgccaaacaaaatacaaatattaaactaaaaattgaatatttataattt |
303 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33199664 |
cttgaaccggtaataattaaataatatattttattaatttttaatatcttatgccaaacaaaatacaaatattaaactaaaaattgaatatttataattt |
33199763 |
T |
|
| Q |
304 |
tagaatatcaaaactcaaaattataactttattaattctatttctacttcaagnnnnnnngaggtaccacttaaaaaggattggtacatgcttgtaccat |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33199764 |
tagaatatcaaaactcaaaattataactttattaattctatttctacttaaagaaaaaa-gaggtaccacttaaaaaggattggtacatgcttgtaccac |
33199862 |
T |
|
| Q |
404 |
aacaagctcacagcagagtataccatcactcccacaccccaaacaatggcacccagcatcttaccattgctagtaaaatatgaaaggcaacaaactatac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33199863 |
aacaagctcacagcagagtataccatcactcccacatcccaaacaatggcacccagcatcttaccattgctagtaaaatatgaaaggcaacaaactatac |
33199962 |
T |
|
| Q |
504 |
cacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttga-gctcactaatgttatggatccatgttggcatcagtgtctcaatcaa |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33199963 |
cacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttgaagctcactaatgttatggatccatgttggcatcagtgtctcaatcaa |
33200062 |
T |
|
| Q |
603 |
gtaataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgtccatcacttgctgcatgtggggacgtggggtgttactt |
702 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33200063 |
gtaataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgtccatcacttgctgcatgtggggacgtggggtgttactt |
33200162 |
T |
|
| Q |
703 |
ttcaatttcttcatattaatgtgataagggtcgttattgtttgctaccatgcacatttatatttaactaacaatcgtcaagaccataacatgatatcatt |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33200163 |
ttcaatttcttcatattaatgtgataagggtcgttattgtttgttaccatgcacatttatatttaactaacaatcgtcaagaccataacatgatattatt |
33200262 |
T |
|
| Q |
803 |
atcatttctacgtgttaaagtcccattttgcttaaaagagataatcagtagatgag-ttttcgctataaataaagacttt |
881 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
33200263 |
atcatttctacgtgttaaagtcccattttgcttaaaagagataatcagtggatgagtttttcgctataaataaagacttt |
33200342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 884 - 928
Target Start/End: Original strand, 33200377 - 33200421
Alignment:
| Q |
884 |
tagatatttatcaacaaagaaaataaaaagactttagattcctag |
928 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33200377 |
tagatatttatcaacaaagaaaataaaaagactttagattcctag |
33200421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 9682196 - 9682251
Alignment:
| Q |
232 |
ttttattaatttttaatatcttatgccaaacaaaatacaaatattaaactaaaaat |
287 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||| |
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| T |
9682196 |
ttttattaatttttaatatcttataccaaacagaatacaaatactaagctaaaaat |
9682251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 4190 - 4077
Alignment:
| Q |
217 |
taattaaataatacatttt-attaatttttaatatcttatgccaaacaaaatacaaatattaaactaaaaattgaatatttataattttagaatatcaaa |
315 |
Q |
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||||||||||||| ||||| ||| ||||| | ||||||| |||| ||||||| |||||| |||||||||| | ||| |||||||||||| ||||| ||| |
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| T |
4190 |
taattaaataatatatttttattcttttttgacatcttataccaagcaaaatataaatatcaaactaaaaact-aatttttataattttataatattaaa |
4092 |
T |
|
| Q |
316 |
actcaaaattataac |
330 |
Q |
| |
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||||||| ||||||| |
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| T |
4091 |
actcaaagttataac |
4077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 743
Target Start/End: Complemental strand, 44770893 - 44770856
Alignment:
| Q |
706 |
aatttcttcatattaatgtgataagggtcgttattgtt |
743 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
44770893 |
aatttcttcatattaatgtgataagtgtcgttattgtt |
44770856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 109276 - 109229
Alignment:
| Q |
238 |
taatttttaatatcttatgccaaacaaaatacaaatattaaactaaaa |
285 |
Q |
| |
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|||||||||||||||||| |||| ||||||| |||||| ||||||||| |
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| T |
109276 |
taatttttaatatcttataccaagcaaaatataaatatcaaactaaaa |
109229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 47375715 - 47375766
Alignment:
| Q |
234 |
ttattaatttttaatatcttatgccaaacaaaatacaaatattaaactaaaa |
285 |
Q |
| |
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|||||||||||| ||||||||| || |||||||| |||||||||||||||| |
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| T |
47375715 |
ttattaatttttcatatcttatacccaacaaaattaaaatattaaactaaaa |
47375766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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