View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321-Insertion-10 (Length: 344)
Name: NF3321-Insertion-10
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321-Insertion-10 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 123280 - 122946
Alignment:
| Q |
8 |
atagagttgaagttgctagtggtcattttgttcaacgtcttaccttgcctgaaaattctaaggttgatcatgttaaggcttatatggacaatggtgtgct |
107 |
Q |
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| T |
123280 |
atagagttgaagttgctagtggtcattttgttcaacgtcttaccttgcctgaaaattctaaggttgatcatgttaaggcttatatggataatggtgtgct |
123181 |
T |
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| Q |
108 |
tactattcacgttcctaagcatagagttgggaacacacgtgttagaaatgttcaaatttctcatgtgtgaaaatgtctacaaccgtgtttcttacctata |
207 |
Q |
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| T |
123180 |
tactattcatgttcctaagcatagagttgggaacacacgtgttagaaatgttcaaatttctcatgtgt-aaaatgtctacaaccgtgtctcttacctcta |
123082 |
T |
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| Q |
208 |
tatgaaatattactatttaaagagagacaattttatgaaatcgaataatgtttcaagagtttatatgtctctttaaataaaagtgttcgttaaattaaga |
307 |
Q |
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| T |
123081 |
tatgaaatattactatttaaagagagacaaatttatgaaataaaataatgtttcatgagtttatatgtctctttaaataaaagtgttcattaaattaaga |
122982 |
T |
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| Q |
308 |
caatttcaaccatcttgtttgaagaatataaactaa |
343 |
Q |
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| T |
122981 |
gaatttcaaccatcttgtttgaagaatataaactaa |
122946 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 7619639 - 7619685
Alignment:
| Q |
59 |
aaaattctaaggttgatcatgttaaggcttatatggacaatggtgtg |
105 |
Q |
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| T |
7619639 |
aaaatgctaaggttgatcaagttaaggctaatatggaaaatggtgtg |
7619685 |
T |
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