View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321-Insertion-12 (Length: 289)
Name: NF3321-Insertion-12
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321-Insertion-12 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 31737668 - 31737565
Alignment:
| Q |
186 |
aagatttttattaccattgcggtagtctatcatttgaaagggatccaaagtccatggtttttacctcagacaaaaataagttaatcaatactagaccagt |
285 |
Q |
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| T |
31737668 |
aagatttttattaccattgcggtagtctatcatttgaaagtgatccaaagtccatggtttttacctcagacaaaaataagtgaatcaatactagaccagt |
31737569 |
T |
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| Q |
286 |
ccag |
289 |
Q |
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| T |
31737568 |
ccag |
31737565 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 31703285 - 31703190
Alignment:
| Q |
186 |
aagatttttattaccattgcggtagtctatcatttgaaagggatccaaagtccatggtttttacctcagacaaaaataagttaatcaatactagac |
281 |
Q |
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| T |
31703285 |
aagatttttattaccgtcacgatagtctatcattggaaagtgatccaaagtccatagtttttacctcggacaaaaataagttaatcaatactagac |
31703190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 31737791 - 31737700
Alignment:
| Q |
96 |
gaacacctaagtagggcattagaagcnnnnnnnntgatcgattttgccctgatattacattagtttatagtaccaatacaaaattttattaag |
188 |
Q |
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| T |
31737791 |
gaacacctaagtagggcattagaagcaaaaaaa-tgatcgattttgccctgatattacattagtttatagtaccaatacaaaattttattaag |
31737700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 31703580 - 31703498
Alignment:
| Q |
15 |
atcgaggtatgaacctatcgaaagaggatagaaactgagcgatccaagagcaagatgcgattgcatatgggctaagatggagaa |
98 |
Q |
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| T |
31703580 |
atcgaggtatggaccaatcgaaagaagagagaaaccgagtgatccaagagcaagacacgatcacatat-ggctaagatggagaa |
31703498 |
T |
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