View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321-Insertion-16 (Length: 132)

Name: NF3321-Insertion-16
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321-Insertion-16
NF3321-Insertion-16
[»] scaffold0038 (4 HSPs)
scaffold0038 (7-132)||(42938-43063)
scaffold0038 (13-132)||(34703-34822)
scaffold0038 (7-132)||(116768-116893)
scaffold0038 (7-132)||(27420-27545)
[»] chr6 (46 HSPs)
chr6 (7-132)||(28242776-28242901)
chr6 (7-132)||(28297803-28297928)
chr6 (7-132)||(28514145-28514270)
chr6 (13-132)||(28234542-28234661)
chr6 (14-132)||(28181093-28181211)
chr6 (14-132)||(28185345-28185463)
chr6 (7-132)||(28325453-28325578)
chr6 (7-132)||(28226922-28227047)
chr6 (11-132)||(26342024-26342145)
chr6 (7-132)||(29825999-29826124)
chr6 (7-130)||(26893563-26893686)
chr6 (13-132)||(27593110-27593229)
chr6 (51-132)||(27678962-27679043)
chr6 (13-132)||(28149916-28150034)
chr6 (14-132)||(27718469-27718587)
chr6 (51-132)||(27677704-27677785)
chr6 (51-132)||(27706492-27706573)
chr6 (20-132)||(28139526-28139638)
chr6 (14-129)||(26802421-26802536)
chr6 (14-132)||(27611092-27611210)
chr6 (14-132)||(27698584-27698702)
chr6 (14-132)||(27724935-27725053)
chr6 (7-132)||(25579691-25579816)
chr6 (14-123)||(28781118-28781227)
chr6 (14-102)||(27338185-27338273)
chr6 (14-102)||(27398925-27399013)
chr6 (51-130)||(26646495-26646574)
chr6 (51-130)||(26752463-26752542)
chr6 (14-105)||(28786257-28786348)
chr6 (14-105)||(28792378-28792469)
chr6 (14-132)||(27229211-27229329)
chr6 (7-132)||(25481714-25481839)
chr6 (51-132)||(26142881-26142962)
chr6 (7-84)||(26937066-26937143)
chr6 (11-131)||(28098460-28098580)
chr6 (13-129)||(31284266-31284382)
chr6 (13-132)||(26622954-26623073)
chr6 (13-132)||(26728932-26729051)
chr6 (74-132)||(26823879-26823937)
chr6 (14-132)||(27604795-27604913)
chr6 (51-132)||(26884179-26884260)
chr6 (74-129)||(26861655-26861710)
chr6 (51-132)||(2184304-2184385)
chr6 (51-132)||(25538556-25538637)
chr6 (17-132)||(26055908-26056023)
chr6 (17-132)||(26075878-26075993)
[»] scaffold0019 (1 HSPs)
scaffold0019 (14-132)||(58372-58490)
[»] chr2 (1 HSPs)
chr2 (12-130)||(3279665-3279783)
[»] chr4 (6 HSPs)
chr4 (7-100)||(5091076-5091169)
chr4 (13-132)||(18679644-18679763)
chr4 (13-132)||(18724162-18724281)
chr4 (13-132)||(18731581-18731700)
chr4 (13-132)||(18699477-18699596)
chr4 (13-132)||(18655554-18655673)
[»] chr1 (2 HSPs)
chr1 (50-132)||(28127756-28127838)
chr1 (13-132)||(268434-268553)
[»] scaffold0349 (2 HSPs)
scaffold0349 (14-123)||(14454-14563)
scaffold0349 (14-105)||(3539-3630)
[»] scaffold1254 (1 HSPs)
scaffold1254 (14-105)||(34-125)
[»] scaffold0419 (1 HSPs)
scaffold0419 (14-105)||(7504-7595)
[»] scaffold0277 (2 HSPs)
scaffold0277 (14-105)||(13749-13840)
scaffold0277 (14-105)||(4788-4879)
[»] chr5 (1 HSPs)
chr5 (16-94)||(16688992-16689070)
[»] chr8 (2 HSPs)
chr8 (76-132)||(29273860-29273916)
chr8 (51-94)||(31903867-31903910)


Alignment Details
Target: scaffold0038 (Bit Score: 114; Significance: 3e-58; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 42938 - 43063
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42938 aattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 43037  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    ||||||| ||||||||||||||||||    
T  43038 ttgtctatcaattatgcttcttcttc 43063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 34703 - 34822
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34703 caccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 34802  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||||||||||||||||||    
T  34803 atcaattatgcttcttcttc 34822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 116768 - 116893
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    |||||| |||||||||||||||| ||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |     
T  116768 aattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctatt 116867  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    ||||||| ||||||||||||||||||    
T  116868 ttgtctatcaattatgcttcttcttc 116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 27420 - 27545
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||| ||| ||| ||||||| ||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  27420 aattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtc 27519  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    ||||||| ||||||||||||||||||    
T  27520 ttgtctatcaattatgcttcttcttc 27545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 3e-58; HSPs: 46)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 28242776 - 28242901
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28242776 aattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 28242875  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    ||||||| ||||||||||||||||||    
T  28242876 ttgtctatcaattatgcttcttcttc 28242901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 28297928 - 28297803
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  28297928 aattcgcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtc 28297829  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    || |||||||||||||||||||||||    
T  28297828 ttatctaccaattatgcttcttcttc 28297803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 28514145 - 28514270
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  28514145 aattcgcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtc 28514244  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    || |||||||||||||||||||||||    
T  28514245 ttatctaccaattatgcttcttcttc 28514270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 28234542 - 28234661
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28234542 caccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 28234641  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||||||||||||||||||    
T  28234642 atcaattatgcttcttcttc 28234661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 28181093 - 28181211
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    |||||||| ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28181093 accttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtcta 28181192  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||||||||||||||||||    
T  28181193 tcaattatgcttcttcttc 28181211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 28185345 - 28185463
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    |||||||| ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28185345 accttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtcta 28185444  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||||||||||||||||||    
T  28185445 tcaattatgcttcttcttc 28185463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 28325453 - 28325578
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    |||||| |||||||||||||||| ||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |     
T  28325453 aattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctatt 28325552  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    ||||||| ||||||||||||||||||    
T  28325553 ttgtctatcaattatgcttcttcttc 28325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 28226922 - 28227047
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||| ||| ||| ||||||| ||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28226922 aattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtc 28227021  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    ||||||| ||||||||||||||||||    
T  28227022 ttgtctatcaattatgcttcttcttc 28227047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 26342145 - 26342024
Alignment:
Q  11 cgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgt 110  Q
    ||||||||||||||||| || |||||||| |||||||||||||| |||| ||||||| |||| |||||||||||||| ||||||||||||||  | || |    
T  26342145 cgcaccttcattgatgatagggagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggattttcattccaattttct 26342046  T
Q  111 ctaccaattatgcttcttcttc 132  Q
    | | ||| ||||||||||||||    
T  26342045 caatcaactatgcttcttcttc 26342024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 29825999 - 29826124
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||||||||||||||||||||| |||||||||| |||| ||| |||| ||||| |||||| | ||||| ||| |||| ||||||||   ||||||| |     
T  29825999 aattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcaattcaagaatctaggatagccattcctatt 29826098  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    || |||||||||||||||||||||||    
T  29826099 ttctctaccaattatgcttcttcttc 29826124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 26893686 - 26893563
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    ||||| ||||||||||||||| | |||||||||  |||||||| ||||  ||||||||||| ||||||| ||||||||||||| ||| | |||||| |||    
T  26893686 aattcacaccttcattgatgatacagagcttcatagaggtgacgaaatctcaccatcacttatcaaggcaattgaagagtctatgatatacattccagtc 26893587  T
Q  107 ttgtctaccaattatgcttcttct 130  Q
     | |||| ||| ||||||||||||    
T  26893586 ctctctatcaactatgcttcttct 26893563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 27593229 - 27593110
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||||  |  |||||| ||||  |  |||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || |||    
T  27593229 caccttcattgatgacaatggtcttcaaagaggaaatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttct 27593130  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||||| ||||||||    
T  27593129 atcaactatgcctcttcttc 27593110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 27678962 - 27679043
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || |||| ||| ||||| ||||||||    
T  27678962 aaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttc 27679043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 28149916 - 28150034
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    ||||||||||||||| |  |||||| || |||| ||| |||| ||||||||||| | |||||||||||||||||| ||||||||||||||  |||| |||    
T  28149916 caccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcactct-caaggccattgaagagtccaggattttcattccaatcttctct 28150014  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||| ||||||||||    
T  28150015 atcaactatacttcttcttc 28150034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 27718587 - 27718469
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  ||||||||||||| || ||||||||||| |||||||| || ||||    
T  27718587 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttcta 27718488  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||| ||||| ||||||||    
T  27718487 tcaactatgcctcttcttc 27718469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 27677785 - 27677704
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| ||| |||| || |||| ||| ||||| ||||||||    
T  27677785 aaatcacaccatcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttc 27677704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 27706573 - 27706492
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || |||| ||  ||||| ||||||||    
T  27706573 aaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttcttc 27706492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 28139526 - 28139638
Alignment:
Q  20 attgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaatt 119  Q
    |||||||| || |||||||||||||||||| ||||| |||| |||||  | || ||||||||||| |||||||||||||| ||||| || || | ||| |    
T  28139526 attgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaact 28139625  T
Q  120 atgcttcttcttc 132  Q
    |||| ||||||||    
T  28139626 atgcctcttcttc 28139638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 26802421 - 26802536
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  |||||||||||||||| ||||| ||||| |||||||| || ||||    
T  26802421 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattcctgtgttttcta 26802520  T
Q  114 ccaattatgcttcttc 129  Q
     ||| ||||| |||||    
T  26802521 tcaactatgcctcttc 26802536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 27611210 - 27611092
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||| | |||| ||  |||| |||||||||||  ||||||||||||| || ||||||||||| |||||||| || ||||    
T  27611210 accttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttcta 27611111  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||| ||||| ||||||||    
T  27611110 tcaactatgcctcttcttc 27611092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 27698702 - 27698584
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  ||||||||||||| || ||||||||||| |||||||| || |||     
T  27698702 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctc 27698603  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||| ||||| ||||||||    
T  27698602 tcaactatgcatcttcttc 27698584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 27725053 - 27724935
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  ||||||||||||| || ||||||||||| |||||||| || ||||    
T  27725053 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttcta 27724954  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||| ||||| | ||||||    
T  27724953 tcaactatgcctattcttc 27724935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 25579691 - 25579816
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    |||||| |||||| ||||||| |  || |||||| |||| ||  |||| |||||||||||| |||||||||||||||| ||||||||||| |||||  |     
T  25579691 aattcgtaccttctttgatgataatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccata 25579790  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    || ||| |||| ||||| ||||||||    
T  25579791 ttttctgccaactatgcatcttcttc 25579816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 28781118 - 28781227
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  |||||||||| ||||| ||||||||||| |||||||| || ||||    
T  28781118 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttcta 28781217  T
Q  114 ccaattatgc 123  Q
     ||| |||||    
T  28781218 tcaactatgc 28781227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 27338273 - 27338185
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcc 102  Q
    ||||||||||||||||  || ||| || |||| ||  |||  |||||||||||| |||||||||||||||||||||||||||| |||||    
T  27338273 accttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcc 27338185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 27399013 - 27398925
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcc 102  Q
    ||||||||||||||||  || ||| || |||| ||  |||  |||||||||||| |||||||||||||||||||||||||||| |||||    
T  27399013 accttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcc 27398925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 26646495 - 26646574
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttct 130  Q
    |||| |||||||||||  |||||||||||||||| ||||||||||| |||||||| || |||| ||| ||||| ||||||    
T  26646495 aaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttct 26646574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 26752463 - 26752542
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttct 130  Q
    |||| |||||||||||  |||||||||||||||| ||||||||||| |||||||| || |||| ||| ||||| ||||||    
T  26752463 aaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttct 26752542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 28786257 - 28786348
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 105  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||||    
T  28786257 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgt 28786348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 28792378 - 28792469
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 105  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||||    
T  28792378 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgt 28792469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 27229211 - 27229329
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||||| |||| ||| |||| |||||||||||  ||||||||||||| || ||| ||||||| |||||  | || |||     
T  27229211 accttcattgatgacaatgatcttcaaagaggagacgaaatcacaccatcactcgtcaaggccattgacgaatctcggatttttattcccatattttctg 27229310  T
Q  114 ccaattatgcttcttcttc 132  Q
    |||| ||||| ||||||||    
T  27229311 ccaactatgcatcttcttc 27229329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 25481714 - 25481839
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 106  Q
    |||||| || ||||||||||| |  || |||||| |||| ||  |||| |||||||||||| |||||||||||||||| ||||||||||  |||||  |     
T  25481714 aattcgtactttcattgatgaaaatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgtattcccata 25481813  T
Q  107 ttgtctaccaattatgcttcttcttc 132  Q
    || ||| |||| ||||| ||||||||    
T  25481814 ttttctgccaactatgcatcttcttc 25481839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 26142881 - 26142962
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||| |||||  | || ||| |||| ||||| ||||||||    
T  26142881 aaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttc 26142962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 26937066 - 26937143
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaaga 84  Q
    |||||||||||||||||||||||  ||||| || ||||| ||  |||| |||||||||||| ||||||| ||||||||    
T  26937066 aattcgcaccttcattgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaattgaaga 26937143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 28098580 - 28098460
Alignment:
Q  11 cgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgt 110  Q
    ||||||||||||||  | | ||| ||||| | |||||| | ||| |||| ||| ||| |||||||||| |||||||| |||||||| ||||| ||||| |    
T  28098580 cgcaccttcattgaccataaagatcttcatgaaggtgatagaatcacacaatcccttgtcaaggccatcgaagagtccaggattttaattccggtcttct 28098481  T
Q  111 ctaccaattatgcttcttctt 131  Q
    |||  || |||||||||||||    
T  28098480 ctaagaactatgcttcttctt 28098460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 31284266 - 31284382
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    ||||||||||||||| || || |||||| |||| ||  |||| |||||||||||   ||| ||||||||||||||||||||||| || || || || |||    
T  31284266 caccttcattgatgatagtgaacttcaaagaggggatgaaatcacaccatcactcgacaatgccattgaagagtctaggatttttatccccgtgttttct 31284365  T
Q  113 accaattatgcttcttc 129  Q
     |||| ||||| |||||    
T  31284366 gccaactatgcctcttc 31284382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 26622954 - 26623073
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||  | || |||||| |||| ||| |||| | ||||||||||  ||| || || ||||||||||||||||| |||||||| || |||    
T  26622954 caccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttct 26623053  T
Q  113 accaattatgcttcttcttc 132  Q
     |||| ||||| | ||||||    
T  26623054 cccaactatgcatattcttc 26623073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 26728932 - 26729051
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||  | || |||||| |||| ||| |||| | ||||||||||  ||| || || ||||||||||||||||| |||||||| || |||    
T  26728932 caccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttct 26729031  T
Q  113 accaattatgcttcttcttc 132  Q
     |||| ||||| | ||||||    
T  26729032 cccaactatgcatattcttc 26729051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 26823879 - 26823937
Alignment:
Q  74 gccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    ||||||||||||||||||||||| |||||||| || ||| |||| ||||| ||||||||    
T  26823879 gccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttcttc 26823937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 27604913 - 27604795
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    |||||||||||||| |  || |||| | |||| ||  |||| |||||| ||||| ||||||||||||| || || |||||||| |||||||| || ||||    
T  27604913 accttcattgatgaaaatgatcttcgaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttttattcctgtgttttcta 27604814  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||| ||||| ||||||||    
T  27604813 tcaaatatgcctcttcttc 27604795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 26884179 - 26884260
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    |||| |||||||||||  |||||||||||||||| ||||| ||||| |||||  | || |||||||| ||||| ||||||||    
T  26884179 aaatcacaccatcactcatcaaggccattgaagaatctagaatttttattccaatattttctaccaactatgcatcttcttc 26884260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 26861655 - 26861710
Alignment:
Q  74 gccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttc 129  Q
    ||||||||||||||||| |||||||||||||| || ||| |||| ||||| |||||    
T  26861655 gccattgaagagtctagaattttcattcctgtgttttctgccaactatgcctcttc 26861710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 2184304 - 2184385
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    |||||||| |||||||| | || |||||||||||||| || |||||||| ||||| || || |  || ||||||||||||||    
T  2184304 aaataacagcatcacttatgaaagccattgaagagtccagaattttcatccctgttttctcaaagaactatgcttcttcttc 2184385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 25538556 - 25538637
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    |||| |||||||||||| |||||||||| ||||| ||||| ||||| |||||  | || ||| |||| ||||| ||||||||    
T  25538556 aaatcacaccatcacttgtcaaggccatcgaagaatctagaatttttattcccatattttctgccaactatgcatcttcttc 25538637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 26055908 - 26056023
Alignment:
Q  17 ttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctacca 116  Q
    ||||||||||| |  || |||||| |||| ||  |||| ||| |||||||| |||||||||| ||||| ||| ||||||| |||||  | || ||| |||    
T  26055908 ttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgcca 26056007  T
Q  117 attatgcttcttcttc 132  Q
    | ||||| ||||||||    
T  26056008 actatgcatcttcttc 26056023  T

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Target: chr6; HSP #46
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 26075878 - 26075993
Alignment:
Q  17 ttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctacca 116  Q
    ||||||||||| |  || |||||| |||| ||  |||| ||| |||||||| |||||||||| ||||| ||| ||||||| |||||  | || ||| |||    
T  26075878 ttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgcca 26075977  T
Q  117 attatgcttcttcttc 132  Q
    | ||||| ||||||||    
T  26075978 actatgcatcttcttc 26075993  T

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Target: scaffold0019 (Bit Score: 95; Significance: 7e-47; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 58490 - 58372
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  58490 accttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtcta 58391  T
Q  114 ccaattatgcttcttcttc 132  Q
     ||| ||||||||||||||    
T  58390 tcaactatgcttcttcttc 58372  T

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Target: chr2 (Bit Score: 55; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 3279665 - 3279783
Alignment:
Q  12 gcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtc 111  Q
    |||||||||||||||| || |||||||| ||||||||  |||| |||| ||||||| |||||||||| |||||||| | |||||| ||||| ||||| ||    
T  3279665 gcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctc 3279764  T
Q  112 taccaattatgcttcttct 130  Q
    || ||| ||||||||||||    
T  3279765 tatcaactatgcttcttct 3279783  T

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Target: chr4 (Bit Score: 50; Significance: 5e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 5091169 - 5091076
Alignment:
Q  7 aattcgcaccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcatt 100  Q
    ||||| |||||||||||||||||||||||||||  |||| ||| |||||||||| |||||| ||||||||||| |||| |||| |||| |||||    
T  5091169 aattcacaccttcattgatgacagagagcttcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgtcatt 5091076  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 18679763 - 18679644
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||| | || || ||| |||| ||  |||| | |||||||||   ||| |||||||||||||||||||| ||||||||||| || |||    
T  18679763 caccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 18679664  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||||| ||||||||    
T  18679663 atcaactatgcctcttcttc 18679644  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 18724281 - 18724162
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||| | || || ||| |||| ||  |||| | |||||||||   ||| |||||||||||||||||||| ||||||||||| || |||    
T  18724281 caccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 18724182  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||||| ||||||||    
T  18724181 atcaactatgcctcttcttc 18724162  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 18731700 - 18731581
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||| | || || ||| |||| ||  |||| | |||||||||   ||| |||||||||||||||||||| ||||||||||| || |||    
T  18731700 caccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 18731601  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||||| ||||||||    
T  18731600 atcaactatgcctcttcttc 18731581  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 18699596 - 18699477
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||| | || || ||| | || ||  |||| | |||||||||   ||| |||||||||||||||||||| ||||||||||| || |||    
T  18699596 caccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 18699497  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||||| ||||||||    
T  18699496 atcaactatgcctcttcttc 18699477  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 18655673 - 18655554
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||| | ||||| ||| | || ||  |||| | |||||||||   ||| |||||| ||||||||||||| || |||||||| || |||    
T  18655673 caccttcattgatgaccgtgagctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattcaagagtctaggatctttattcctgtgttttct 18655574  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||||| ||||||||    
T  18655573 atcaactatgcctcttcttc 18655554  T

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Target: chr1 (Bit Score: 43; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 28127838 - 28127756
Alignment:
Q  50 aaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||||| || |||||||| ||||| ||||||||    
T  28127838 aaaatcacaccgtcacttttaaaggccattgaagaatctagaatttttattcctgtattttctaccaactatgcctcttcttc 28127756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 268553 - 268434
Alignment:
Q  13 caccttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtct 112  Q
    |||||||||||||||  | || |||||| |||| ||  |||| | |||||||||   ||| ||||||||||||||||||||||| |||||||| || |||    
T  268553 caccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatttttattcctgtgttttct 268454  T
Q  113 accaattatgcttcttcttc 132  Q
    | ||| ||||| ||||||||    
T  268453 atcaactatgcctcttcttc 268434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 14563 - 14454
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtcta 113  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  ||||||||||||| || ||||||||||| |||||||| || ||||    
T  14563 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttcta 14464  T
Q  114 ccaattatgc 123  Q
     ||| |||||    
T  14463 tcaactatgc 14454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 3630 - 3539
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 105  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  ||||||||||||| || ||||||||||| ||||||||    
T  3630 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgt 3539  T

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Target: scaffold1254 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 125 - 34
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 105  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||||    
T  125 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgt 34  T

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Target: scaffold0419 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 7504 - 7595
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 105  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||||    
T  7504 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgt 7595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 13840 - 13749
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 105  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||||    
T  13840 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgt 13749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 4879 - 4788
Alignment:
Q  14 accttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 105  Q
    ||||||||||||||||  || |||||| |||| ||  |||| |||||||| ||   |||||||||||| || ||||||||||| ||||||||    
T  4879 accttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatccctccgcaaggccattgatgaatctaggatttttattcctgt 4788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 16688992 - 16689070
Alignment:
Q  16 cttcattgatgacagagagcttcaaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggatt 94  Q
    ||||||||||||||  || |||||  ||||||||||||| |||||||||||| ||||||| |||||||| || ||||||    
T  16688992 cttcattgatgacaaggaacttcagagaggtgacaaaatcacaccatcacttatcaaggcaattgaagactcaaggatt 16689070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 29273916 - 29273860
Alignment:
Q  76 cattgaagagtctaggattttcattcctgtcttgtctaccaattatgcttcttcttc 132  Q
    ||||||||||||||| ||||| |||||||| || |||| ||| ||||| ||||||||    
T  29273916 cattgaagagtctagaatttttattcctgtgttttctatcaactatgcctcttcttc 29273860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 31903867 - 31903910
Alignment:
Q  51 aaataacaccatcacttttcaaggccattgaagagtctaggatt 94  Q
    |||| ||||||||||||||  |||| ||||||||||||||||||    
T  31903867 aaatcacaccatcacttttagaggcaattgaagagtctaggatt 31903910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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