View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3321-Insertion-3 (Length: 788)
Name: NF3321-Insertion-3
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321-Insertion-3 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 698; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 6 - 788
Target Start/End: Complemental strand, 47075486 - 47074693
Alignment:
| Q |
6 |
caagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcatgctgaggagactgttgctgc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075486 |
caagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcatgctgaggagactgttgctgc |
47075387 |
T |
|
| Q |
106 |
aaggagtgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatatccg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075386 |
aaggagtgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatatccg |
47075287 |
T |
|
| Q |
206 |
ttttatttattacattcttaaaactcatcttgctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctattt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075286 |
ttttatttattacattcttaaaactcatcttgctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctattt |
47075187 |
T |
|
| Q |
306 |
gcaagactgaagttaaagacaacaatttaaatccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075186 |
gcaagactgaagttaaagacaacaatttaaatccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatt |
47075087 |
T |
|
| Q |
406 |
tgcaacatgtctgatgttacatcatattcatatatagattactctgacannnnnnnaatttctttctctatgcaggataatccgttacttattgagtgtt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075086 |
tgcaacatgtctgatgttacatcatattcatatatagattactctgacatttttttaatttctttctctatgcaggataatccgttacttattgagtgtt |
47074987 |
T |
|
| Q |
506 |
ttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattatatagctttttgtttagcctaaacttctttaggctttacactttc---- |
601 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074986 |
ttgatttcaatagcagtggaaatcatgcacttatagggtaatgtcaaattatatagctttttgtttagcctaaacttctttaggctttacactttctagt |
47074887 |
T |
|
| Q |
602 |
----------tagatgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcaggacccttgaaaagctataccaagagaga |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47074886 |
tcatactttatagatgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcag--accttgaaaagctataccaagagaga |
47074789 |
T |
|
| Q |
692 |
aaaggcgcaaattttgtcatgcgatcaacacgcaatgggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttga |
788 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074788 |
aaaggcgcaaattttgtcatgcgatccacacgcaat-ggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttga |
47074693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 239 - 432
Target Start/End: Complemental strand, 47057452 - 47057258
Alignment:
| Q |
239 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaac-aatttaaat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
47057452 |
tttttcttgtaggatccttttctaaggatatcaagaatggttgagagtggaggttctgttcctatttgcaagactgaagttatagacaacaaatttaaat |
47057353 |
T |
|
| Q |
338 |
ccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatat |
432 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |||||| ||||||| |
|
|
| T |
47057352 |
ccaaaatggaaaccagtttgtcttaatttccagcagtttggaagtatagtaagcttgcgatctttgaacacaacatgtctaatgttaaatcatat |
47057258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 47057780 - 47057666
Alignment:
| Q |
74 |
attaccattcatgctgaggagactgttgctgcaaggagtgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtg |
173 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
47057780 |
attaccattcttgctgaagagactgttgcttcaaggagtgctgttgagattatcttccgttgttctcgcttggataacaaagacattttttctaaaagtg |
47057681 |
T |
|
| Q |
174 |
taaatattcaatacc |
188 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
47057680 |
tacatattcaatacc |
47057666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 47057031 - 47056945
Alignment:
| Q |
472 |
tctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattata |
558 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||||||||||||||||||| ||| || ||||||||||| || |||||||||||||||||| |
|
|
| T |
47057031 |
tctatgcaggatactccattagttatcgagtgttttgatttcaatatcagcggcaatcatgtactaatcgggtaatgtcaaattata |
47056945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 614 - 750
Target Start/End: Complemental strand, 47056896 - 47056763
Alignment:
| Q |
614 |
agtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcaggacccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgc |
713 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||| ||| || |||||| |||||||||||||| | | ||||||||||| | ||||||||||||| |
|
|
| T |
47056896 |
agtgacatcaaagtttgttgccatcagtaaaatgcagaaaacaatagcaga--ccttgaaaagctatgcaatgagagaaaaggtgtgaattttgtcatgc |
47056799 |
T |
|
| Q |
714 |
gatcaacacgcaatgggacaagagaaggtattcattg |
750 |
Q |
| |
|
||| | |||||| |||||||||||||| ||||||| |
|
|
| T |
47056798 |
catccaaacgcaa-aggacaagagaaggtgttcattg |
47056763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 239 - 762
Target Start/End: Original strand, 18230146 - 18230687
Alignment:
| Q |
239 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaacaatttaaatc |
338 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || | |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
18230146 |
tttttcttgcaggatccttttctaaggatatcacgagtggttgagagtggaggaactgttcctattttcaagactgaagttatagacaacaatttaaatc |
18230245 |
T |
|
| Q |
339 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatattcatat |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||| ||||||||||| |
|
|
| T |
18230246 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttcgatctttgtgcacaacatgtccgatgttacaccatattcatat |
18230345 |
T |
|
| Q |
439 |
atagattactctgacannnnnnnaatttctttctctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtactta |
538 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
18230346 |
atagattactctgaca-ttttttaatttctttctctatgcaggatactccattgcttattgagtgttttgatttcaatagcagcggcaatcatgtactta |
18230444 |
T |
|
| Q |
539 |
tagggtaatgtcaaattatatag----ctttttgtttagcctaaacttctttaggctttacactttc------------------tagatgcaaaatagt |
616 |
Q |
| |
|
| ||||||||||||||||||| | |||| ||||||||||||| | |||||||||||||||||| ||||||||||||| | |
|
|
| T |
18230445 |
tcgggtaatgtcaaattatattgttttattttcgtttagcctaaacatttttaggctttacactttctagtccatatactatatatagatgcaaaatact |
18230544 |
T |
|
| Q |
617 |
gacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcaggacccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcgat |
716 |
Q |
| |
|
|||||||| |||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| || |
|
|
| T |
18230545 |
gacatcaaagtttgttgccgacagtaaactgaaaaaatcagtagcag--accttgaaaagctataccaagaaaaaaaaggcgcaaattttgtcatgccat |
18230642 |
T |
|
| Q |
717 |
caacacgcaatgggacaagagaaggtattcattggtccctgaaatc |
762 |
Q |
| |
|
| ||||||||| |||||||||||||| ||||||| |||||| |||| |
|
|
| T |
18230643 |
ccacacgcaat-ggacaagagaaggtgttcattgatccctgcaatc |
18230687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 18229881 - 18230076
Alignment:
| Q |
7 |
aagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcatgctgaggagactgttgctgca |
106 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||| |||||| || | |||||| ||| |||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
18229881 |
aagcaggagcttaaccataaggcttcaaaacaaaggagggaatattagtcaaataaatcaaggggcaattaccattcacgctgaggaaacagttgctgca |
18229980 |
T |
|
| Q |
107 |
aggagtgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatat |
202 |
Q |
| |
|
| || ||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
18229981 |
aagaatgctgttgatattatcttccgctgctctcacttggataacaaagacattttttctaaaagtgtacatattcaatacctagcttcatcatat |
18230076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University