View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321-Insertion-4 (Length: 689)

Name: NF3321-Insertion-4
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321-Insertion-4
NF3321-Insertion-4
[»] chr8 (5 HSPs)
chr8 (8-392)||(27513835-27514217)
chr8 (402-587)||(27513624-27513807)
chr8 (402-544)||(8675102-8675245)
chr8 (222-368)||(8674890-8675040)
chr8 (613-685)||(27510727-27510799)
[»] chr1 (5 HSPs)
chr1 (8-270)||(39209649-39209911)
chr1 (297-685)||(39209906-39210263)
chr1 (225-368)||(24037047-24037194)
chr1 (403-587)||(24036791-24036978)
chr1 (128-175)||(24037276-24037323)
[»] chr3 (2 HSPs)
chr3 (402-556)||(9461134-9461298)
chr3 (128-170)||(9460971-9461013)
[»] chr6 (1 HSPs)
chr6 (459-511)||(18331979-18332031)
[»] chr2 (1 HSPs)
chr2 (463-576)||(38950770-38950885)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 27514217 - 27513835
Alignment:
Q  8 ctccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  27514217 ctccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccgatcttcttctctttgttctctgatttttcaaat 27514118  T
Q  108 tccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaat 207  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | |||  |||    
T  27514117 tctgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaaaggagacgaagaccagaat 27514018  T
Q  208 gaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagtcga 307  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  27514017 gaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagtcga 27513918  T
Q  308 aagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga 392  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  27513917 aagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga 27513835  T

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Target: chr8; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 402 - 587
Target Start/End: Complemental strand, 27513807 - 27513624
Alignment:
Q  402 atttctgtgttgttgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggc 501  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  27513807 atttctgtgttgtcgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactacctgcaagcctgatgatgaagaggt 27513708  T
Q  502 tgagttttttgaattttgattgttttggactaatttgaatatgaatagatcagattcccaatgttgtgagtgtaggaatatatatt 587  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||  ||||| |||||||||| |||||||||||    
T  27513707 tgagttttttgaattttgagtgttttgaactaatttgaatatgaatagattagatt-tcaatgatgtgagtgta-gaatatatatt 27513624  T

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Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 402 - 544
Target Start/End: Original strand, 8675102 - 8675245
Alignment:
Q  402 atttctgtgttgttgtagcttccagagaagaaggtgccgaagacc-ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagagg 500  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||  |||| |||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  8675102 atttctgtgttgttgtagcctccggagaagaaggtgccgaagacgattgagaatacaagggaagttgatgagactgtttgcaagcctgatgatgaagagg 8675201  T
Q  501 ctgagttttttgaattttgattgttttggactaatttgaatatg 544  Q
     |||||||||| ||||||||||||||||  ||||||| ||||||    
T  8675202 ttgagttttttaaattttgattgttttgacctaatttcaatatg 8675245  T

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Target: chr8; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 222 - 368
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
Q  222 gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga 317  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||     ||| |||||| || | ||||| |||||||| || ||||| ||    
T  8674890 gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga 8674989  T
Q  318 tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc 368  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  8674990 tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc 8675040  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 613 - 685
Target Start/End: Complemental strand, 27510799 - 27510727
Alignment:
Q  613 acaagaatgagtttgaggtggctgtcaaaaagaggaacgaagaaagtctattttaccgac-gttggacattttt 685  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  27510799 acaagaatgagtttgaggtggctgtcaaaaagaggaacg-agaaagtctattttactgacggttggacattttt 27510727  T

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Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 39209649 - 39209911
Alignment:
Q  8 ctccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaat 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209649 ctccctcacactgttttccccttctttatcgtccttcccctcacctccttctccttgccaccatccaatcttcttccctttcttctctgatttttcaaat 39209748  T
Q  108 tccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39209749 tccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagtgacggaaaccgaaat 39209848  T
Q  208 gaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa 270  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209849 gaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa 39209911  T

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Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 297 - 685
Target Start/End: Original strand, 39209906 - 39210263
Alignment:
Q  297 tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttgannnn 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||        
T  39209906 tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttgatttt 39210005  T
Q  397 nnnnnatttctgtgttgttgtagcttccagagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaa 496  Q
         |||||||||||||||||||||||| |||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210006 ttt--atttctgtgttgttgtagcttccatagaagaa-----------ccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaa 39210092  T
Q  497 gaggctgagttttttgaattttgattgttttggactaatttgaatatgaatagatcagattcccaatgttgtgagtgtaggaatatatattataatggat 596  Q
    |||| ||| |||||||||                ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||     
T  39210093 gaggttgatttttttgaa----------------ctaatttgaatatgaatagattagattcc-aatgttgtgagtgtag-aatatatattataatggag 39210174  T
Q  597 gctccatttgatgtatacaagaatgagtttgaggtggctgtcaaaaagaggaacgaagaaagtctattttaccgac-gttggacattttt 685  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||    
T  39210175 gttccatttgatgtatacaagaatgactttgaggtggctgtcaaaaagaggaacg-tgaaagtctattttactgacggttggacattttt 39210263  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 225 - 368
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
Q  225 cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc 320  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||     ||| |||||| || ||||||  ||||||||||||||||||||||     
T  24037194 cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt 24037095  T
Q  321 tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc 368  Q
    || | || |||| ||||||||| ||||||||||||||| |||||||||    
T  24037094 tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc 24037047  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 403 - 587
Target Start/End: Complemental strand, 24036978 - 24036791
Alignment:
Q  403 tttctgtgttgttgtagcttccagagaagaaggtgccgaaga-ccttgaaaatacaagggaagttgatgaaactatctgcaag----cctgatgatgaag 497  Q
    |||||||||||||||||||||| ||||| ||| |||||||||   | ||| |||||||  |||||||||||||||||||||||    |||||||||||||    
T  24036978 tttctgtgttgttgtagcttccggagaaaaagctgccgaagatgatcgaagatacaagctaagttgatgaaactatctgcaagccatcctgatgatgaag 24036879  T
Q  498 aggctgagttttttgaattttgattgttttggact-aatttgaatatgaatagatcagattcccaatgttgtgagtgtaggaatatatatt 587  Q
    ||| |||||||||| | ||||||||||||||  || |||||| |||| |||| ||||||||  ||||||| |||||||| |||||||||||    
T  24036878 aggttgagtttttt-agttttgattgttttgatctaaatttgtatataaataaatcagatt-tcaatgttttgagtgta-gaatatatatt 24036791  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 24037323 - 24037276
Alignment:
Q  128 aaccttcccaaaccttctaattggctttcggtgggaagaggaaccgca 175  Q
    |||||||||||||||| | || ||||||||||||||||||||| ||||    
T  24037323 aaccttcccaaaccttatgatcggctttcggtgggaagaggaagcgca 24037276  T

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Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 402 - 556
Target Start/End: Original strand, 9461134 - 9461298
Alignment:
Q  402 atttctgtgttgttgtagcttccagagaagaaggtgccgaagacc-ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagagg 500  Q
    |||| |||||||||| |||||||  | |||||||||  |||||   |||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  9461134 atttttgtgttgttgcagcttccgaataagaaggtgttgaagattattgaaaataagaaggaagttgatgaaactatctgcaagcctgatgatgaagagg 9461233  T
Q  501 ctgagttttt---------tgaattttgattgttttggactaatttgaatatgaatagatcagat 556  Q
     |||||||||         | ||||||||||||||||  ||||||||||||||| ||||| ||||    
T  9461234 ttgagtttttttttttttgttaattttgattgttttgacctaatttgaatatgattagattagat 9461298  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 9460971 - 9461013
Alignment:
Q  128 aaccttcccaaaccttctaattggctttcggtgggaagaggaa 170  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  9460971 aaccttcccaaaccttctgattggctttcggtgggaacaggaa 9461013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 18332031 - 18331979
Alignment:
Q  459 gggaagttgatgaaactatctgcaagcctgatgatgaagaggctgagtttttt 511  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  18332031 gggaagttgatgaaactatctacaagcctgatgatgaagaggttgagtttttt 18331979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 463 - 576
Target Start/End: Complemental strand, 38950885 - 38950770
Alignment:
Q  463 agttgatgaaactatctgcaagcctgatgatgaagaggctgagttttttg------aattttgattgttttggactaatttgaatatgaatagatcagat 556  Q
    ||||||||||||||||||||||||||||||   ||||| ||||||||||       ||||||||||||||||  ||||||||||||||| ||||| ||||    
T  38950885 agttgatgaaactatctgcaagcctgatga---agaggttgagtttttttttttttaattttgattgttttgacctaatttgaatatgattagattagat 38950789  T
Q  557 tcccaatgttgtgagtgtag 576  Q
    |  ||| |||||||||||||    
T  38950788 t-tcaaagttgtgagtgtag 38950770  T

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