View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321-Insertion-6 (Length: 545)
Name: NF3321-Insertion-6
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Original strand, 10062012 - 10062527
Alignment:
| Q |
12 |
attggctcttgagtgtttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcattttcgactttcacatcaatgtttctt |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
10062012 |
attgactcttgagtgtttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcatattagactttcacatcaatgtttctt |
10062111 |
T |
|
| Q |
112 |
tatggtgttatgcatttatcaccttccttatactcaaaagaacaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatcatgtg |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10062112 |
tatggtgttatgcatttatcaccttccttatactcaaaagatcaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatcatatg |
10062211 |
T |
|
| Q |
212 |
tcctcaaaatccattaatcatgtcttttcacagttaagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaatagg |
311 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10062212 |
tcctcaaaatcaattaatcatgtcttttcacacttaagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttggtattaaaaatagg |
10062311 |
T |
|
| Q |
312 |
tgcattccaactgagaagaataaaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacagattttggtaagcttaactctgcctctag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10062312 |
tgcattccaactgagaagaataaaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacggattttggtaagcttaactctgcctctag |
10062411 |
T |
|
| Q |
412 |
tgtgatagcgagttgtttaaaattcaactatgcaatagggctgtagcactgctatagacgctatttaacatgagggggatgcaaaatgacagtcacgttc |
511 |
Q |
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||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
10062412 |
tgtgatagcgatttgttt-aaattcaactatgcaata-gactgtagcactgctatagacgctatttaacatga-ggggatgcaaaatgacagccacgttc |
10062508 |
T |
|
| Q |
512 |
tt-aaagaatgacaagatc |
529 |
Q |
| |
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|| |||||||||||||||| |
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| T |
10062509 |
ttaaaagaatgacaagatc |
10062527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 7134071 - 7133887
Alignment:
| Q |
148 |
aaagaacaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatca--tgtgtcctcaaaatccattaatcatgtcttttcacagt |
245 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||| | | |||||| ||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
7134071 |
aaagaacaaagagcaaatttgtggctgctcgtcctgctaaggtcactgaaacattgatcaaatgtgtcctcaaaatccattaatcatgtcttttcactct |
7133972 |
T |
|
| Q |
246 |
taagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaataggtgcattccaactgagaaga |
330 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||| ||||| || |||||||| |
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| T |
7133971 |
taagcttcaatggctatttcagcagtaacacataaatggccttgtttgctttgtatcacaaataggtacattcaaattgagaaga |
7133887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 7125249 - 7125065
Alignment:
| Q |
148 |
aaagaacaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatcatgt--gtcctcaaaatccattaatcatgtcttttcacagt |
245 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||| || | | |||| ||||||| || |||||||||| |||||||||| |||||||||| | |
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| T |
7125249 |
aaagaacaaagagcaaagttgcggttgctcgtcctgctgaggacactcaaacattgatcaagtatgtcctcaaaacccattaatcacgtcttttcactct |
7125150 |
T |
|
| Q |
246 |
taagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaataggtgcattccaactgagaaga |
330 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| | |||||||| |||||||| |||||||| |
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| T |
7125149 |
taagcttcaatgactatttcagcagtaacacataaatgacattgtttgctttgtatcacaaataggtacattccaattgagaaga |
7125065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 7128568 - 7128468
Alignment:
| Q |
230 |
catgtcttttcacagttaagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaataggtgcattccaactgagaag |
329 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||| | | | ||||||| |||||||| ||||||| |
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| T |
7128568 |
catgtcttttcactcttaagattcaatggctattttagcagtaacacataaacgaccttgtttgctttgtgtcacaaataggaacattccaattgagaag |
7128469 |
T |
|
| Q |
330 |
a |
330 |
Q |
| |
|
| |
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|
| T |
7128468 |
a |
7128468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 7125383 - 7125288
Alignment:
| Q |
28 |
ttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcattttcgactttcacatcaatgtttctttatggtgttatgca |
125 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |||||| |||||||||| |||| || | ||||||| |
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|
| T |
7125383 |
ttttgaaaagaagcatcaagcaaacaacacgagaagagctcatttgtgtttgtttcattttagacttt--catcaatgttcctttctgatattatgca |
7125288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 7128651 - 7128590
Alignment:
| Q |
126 |
tttatcaccttccttatactcaaaagaacaaaaagcaaatttgtggttgctcgtcctgctaag |
188 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||| |||||| ||||||| ||||||||||| |
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| T |
7128651 |
tttatcacctttcttatactcaaa-gaacaaagagcgaatttgcggttgctagtcctgctaag |
7128590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 11956945 - 11956905
Alignment:
| Q |
148 |
aaagaacaaaaagcaaatttgtggttgctcgtcctgctaag |
188 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||| |
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| T |
11956945 |
aaaggacaaagagcaaatttgtggttgctcgtcctgctaag |
11956905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 739171 - 739325
Alignment:
| Q |
334 |
aaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacagattttggtaagcttaactctgcctctagtgtgatagcgagttgtttaaaa |
433 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||| ||| |
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| T |
739171 |
aaacaggctgcgacttttctgttttgctgcaatatcagaataaaacacagattttgataagcttaactctgcttctagtgtgatagcaatttgttt-aaa |
739269 |
T |
|
| Q |
434 |
ttcaactatgcaatagggctgtagcactgctatagacgctatttaacatgaggggga |
490 |
Q |
| |
|
||||||||||||||| |||| |||| ||| ||||| |||||||||||||||| |||| |
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|
| T |
739270 |
ttcaactatgcaata-ggctatagcgctgttataggcgctatttaacatgagaggga |
739325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 738740 - 738835
Alignment:
| Q |
28 |
ttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcattttcgactttcacatcaatgtttctttatggtgttatgca |
125 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||||| |||||||||| |||| |||| ||||||| |
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|
| T |
738740 |
ttttgaaaagaagcatcaagcaaacaatacgagaagagcaaatttgtgttattttcattttagacttt--catcaatgttcctttctggtattatgca |
738835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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