View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321-Insertion-7 (Length: 513)

Name: NF3321-Insertion-7
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321-Insertion-7
NF3321-Insertion-7
[»] chr3 (4 HSPs)
chr3 (6-511)||(51199803-51200308)
chr3 (219-269)||(52708625-52708675)
chr3 (219-267)||(22508738-22508786)
chr3 (219-271)||(45267304-45267356)
[»] chr4 (1 HSPs)
chr4 (219-269)||(19674415-19674465)
[»] chr6 (1 HSPs)
chr6 (219-280)||(21165236-21165297)
[»] chr1 (6 HSPs)
chr1 (220-269)||(48334141-48334190)
chr1 (219-269)||(9774896-9774946)
chr1 (223-269)||(24427381-24427427)
chr1 (219-269)||(37396848-37396898)
chr1 (219-269)||(50164404-50164454)
chr1 (219-279)||(27264224-27264284)
[»] chr8 (5 HSPs)
chr8 (219-275)||(10718456-10718512)
chr8 (219-269)||(10717122-10717172)
chr8 (219-269)||(36588223-36588273)
chr8 (219-269)||(39440430-39440480)
chr8 (219-268)||(3483635-3483684)
[»] chr7 (3 HSPs)
chr7 (220-279)||(39619800-39619859)
chr7 (220-269)||(24197112-24197161)
chr7 (219-267)||(11217079-11217127)
[»] scaffold0517 (1 HSPs)
scaffold0517 (219-269)||(10316-10366)
[»] scaffold0095 (1 HSPs)
scaffold0095 (219-269)||(42763-42813)
[»] scaffold0001 (1 HSPs)
scaffold0001 (219-269)||(119594-119644)
[»] chr2 (1 HSPs)
chr2 (219-269)||(1777470-1777520)


Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 6 - 511
Target Start/End: Original strand, 51199803 - 51200308
Alignment:
Q  6 caatacatatattaagtgtcaggcttatggtgttcaaatcacataaataccctgttcgttagaagggaaacctagttctatggtttggtttgggagggct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51199803 caatacatatattaagtgtcaggcttatggtgttcaaatcacataaataccctgttcgttagaagggaaacctagttctatggtttggtttgggagggct 51199902  T
Q  106 attggaaaaaacaacaaaagacaagaaatatggttccccgatctgaactggaggactcaaaaatatgcattggaggaaaatgctagagggcttnnnnnnn 205  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||           
T  51199903 attggaaaaaacaacaaaagacaagaaatatggttccctgatctgaactggaggactcaaaaatatgcattggaagaaaatgctagagggcttaaaaaaa 51200002  T
Q  206 tagacattacaacgaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaaaagatagtttatatgattttgattt 305  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  51200003 tagacattacagcgaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttaagcttatatataaaaagatagtttatataattttgattt 51200102  T
Q  306 ggatttcttgttgtaattgtgtaacgcaattattgtccaattgaaataaacgatggaggtcgttttattgtgagaaatagagtttaaaatataaactttc 405  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  51200103 ggatttcttgttgtaattgtgtaacgcaattattgtccaatcgaaataaacgatcgaggtcgttttattgtgagaaatagagtttaaaatataaactgtc 51200202  T
Q  406 cgatctcaaatcaatgattgagaaccacctgaaaacgctataacaatgaatacaggtccatctaagttgacctgctaaaaatccatgtattattcgtttg 505  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51200203 cgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccatctaagttgacctgttaaaaatccatgtattattcgtttg 51200302  T
Q  506 tgttgt 511  Q
    ||||||    
T  51200303 tgttgt 51200308  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 52708625 - 52708675
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  52708625 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 52708675  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 22508786 - 22508738
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 267  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||    
T  22508786 gaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 45267356 - 45267304
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagctt 271  Q
    ||||||||||| ||||||||||||||| | ||| ||||  |||||||||||||    
T  45267356 gaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagctt 45267304  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 19674465 - 19674415
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  19674465 gaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagc 19674415  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 21165297 - 21165236
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaa 280  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||  |||||||||    
T  21165297 gaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagccaatatataaa 21165236  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 48334141 - 48334190
Alignment:
Q  220 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    |||||||||| || |||||||||||||| |||||||| ||||||||||||    
T  48334141 accaaaactcaaattcgctatatttgtagggaccaaaagcatattttagc 48334190  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 9774896 - 9774946
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  9774896 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 9774946  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 24427381 - 24427427
Alignment:
Q  223 aaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  24427381 aaaactcaaactcgctatatttgtagggaccaaaaacatattttagc 24427427  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 37396848 - 37396898
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  37396848 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 37396898  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 50164454 - 50164404
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  50164454 gaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagc 50164404  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 27264224 - 27264284
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 279  Q
    ||||||||| | ||||||||||||||| | ||||||||  ||||||||||| |||| ||||    
T  27264224 gaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctataaataa 27264284  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 10718456 - 10718512
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatat 275  Q
    ||||||||| | ||||||||||||||| | |||||||| |||||||||||| |||||    
T  10718456 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctatat 10718512  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 10717172 - 10717122
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  10717172 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 10717122  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 36588273 - 36588223
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  36588273 gaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagc 36588223  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 39440430 - 39440480
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  39440430 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 39440480  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 3483684 - 3483635
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttag 268  Q
    ||||||||||| ||||||||||||||| | ||||||||  ||||||||||    
T  3483684 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 39619800 - 39619859
Alignment:
Q  220 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 279  Q
    |||||||| | ||||||| ||||||| |||||||||| |||||||||||| ||| |||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcctatttataa 39619859  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 24197112 - 24197161
Alignment:
Q  220 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    |||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  24197112 accaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 24197161  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 11217079 - 11217127
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 267  Q
    |||||||| || ||||||||||||||| | |||||||| ||||||||||    
T  11217079 gaccaaaattcaaactcgctatatttgcagggaccaaaagcatatttta 11217127  T

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Target: scaffold0517 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 10366 - 10316
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  10366 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 10316  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 42763 - 42813
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  42763 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 42813  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 119644 - 119594
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  119644 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 119594  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 1777520 - 1777470
Alignment:
Q  219 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 269  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||||    
T  1777520 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagc 1777470  T

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