View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321-Insertion-8 (Length: 366)

Name: NF3321-Insertion-8
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321-Insertion-8
NF3321-Insertion-8
[»] chr7 (4 HSPs)
chr7 (20-245)||(27338111-27338336)
chr7 (324-366)||(27338521-27338563)
chr7 (166-245)||(18926322-18926401)
chr7 (169-245)||(34681690-34681766)
[»] chr4 (4 HSPs)
chr4 (164-245)||(2063468-2063549)
chr4 (144-245)||(24546740-24546840)
chr4 (194-244)||(48097975-48098025)
chr4 (167-236)||(2818355-2818424)
[»] chr3 (7 HSPs)
chr3 (166-245)||(54290809-54290888)
chr3 (167-245)||(43803965-43804043)
chr3 (167-242)||(11692729-11692804)
chr3 (190-245)||(31625372-31625427)
chr3 (166-231)||(37708432-37708497)
chr3 (164-245)||(53040462-53040543)
chr3 (143-175)||(42939521-42939553)
[»] chr8 (5 HSPs)
chr8 (166-245)||(31264992-31265071)
chr8 (164-245)||(37564364-37564445)
chr8 (164-242)||(25279922-25279999)
chr8 (144-231)||(11533205-11533292)
chr8 (165-241)||(1502706-1502783)
[»] chr2 (5 HSPs)
chr2 (166-245)||(32859780-32859859)
chr2 (144-245)||(18684333-18684436)
chr2 (169-245)||(40347979-40348055)
chr2 (166-244)||(44195502-44195580)
chr2 (161-245)||(14663212-14663296)
[»] chr5 (6 HSPs)
chr5 (164-245)||(25437906-25437988)
chr5 (167-242)||(24041058-24041133)
chr5 (194-244)||(7210952-7211002)
chr5 (144-214)||(34032153-34032223)
chr5 (166-230)||(27310260-27310325)
chr5 (169-245)||(14309119-14309195)
[»] chr1 (8 HSPs)
chr1 (167-245)||(46592501-46592579)
chr1 (166-245)||(5250933-5251012)
chr1 (169-242)||(5423781-5423854)
chr1 (164-225)||(39912262-39912323)
chr1 (167-242)||(10370419-10370494)
chr1 (194-231)||(4521054-4521091)
chr1 (194-242)||(1600972-1601020)
chr1 (164-244)||(44442243-44442323)
[»] scaffold0011 (1 HSPs)
scaffold0011 (164-242)||(219183-219261)
[»] chr6 (1 HSPs)
chr6 (194-244)||(25028731-25028781)
[»] scaffold0009 (1 HSPs)
scaffold0009 (165-214)||(189063-189112)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 27338111 - 27338336
Alignment:
Q  20 gaaacactggttagcatttctcttatctttaacatgtttatctgaattaaaatccagaatattttagttatgtagttgagtttctaattgagtttgtccc 119  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  27338111 gaaacactcgttagcatttctcttatctttaacatgtttatctgagttaaaatccagaatattttagttatggagttgagtttctaattgagtttgtcac 27338210  T
Q  120 ctagatagtttataaataaaggctttgtgaacgagtgttcttgagacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggtt 219  Q
    |||||||||||||||| |||||  ||||||||||||||||||| | ||||||||||||||| |||| ||  || ||||||||||||||| | |||| |||    
T  27338211 ctagatagtttataaacaaaggtcttgtgaacgagtgttcttggggcactctttaagcatgctaaattagaaaattattctttaaaaaaatcaaacagtt 27338310  T
Q  220 caatttccaatgtattaaatacacaa 245  Q
    ||||||||||| ||||||||||||||    
T  27338311 caatttccaatatattaaatacacaa 27338336  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 27338521 - 27338563
Alignment:
Q  324 gaaatcgttgtacacacacttggcacgtgcaagggcaattagg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27338521 gaaatcgttgtacacacacttggcacgtgcaagggcaattagg 27338563  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 18926322 - 18926401
Alignment:
Q  166 cactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||||||| |||||  ||||| |||||||||||||| || |||  ||||||||| ||||| ||| |||||||||    
T  18926322 cactctttaagcattttaaatcatgaaattattctttaaaaaggtgaaatagttcaattttcaatgcattgaatacacaa 18926401  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 34681690 - 34681766
Alignment:
Q  169 tctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||||  |||| || ||| ||||| |||| |||||| |||  ||||||||||||||| |||||||||||||    
T  34681690 tctttaagcattctaaattaggaaattattttttacaaaagtcaaatagttcaatttccaatgcattaaatacacaa 34681766  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 2063468 - 2063549
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  2063468 gacactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaa 2063549  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 24546840 - 24546740
Alignment:
Q  144 ttgtgaacgagtgttcttgagacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacac 243  Q
    |||| |||||||| ||| || ||||||||||||||||||||| || ||| ||||||||||||||| | || | |||||||||||||||||||||||||||    
T  24546840 ttgttaacgagtgctctaga-acactctttaagcatgttaaattaggaaattattctttaaaaaattcaagcagttcaatttccaatgtattaaatacac 24546742  T
Q  244 aa 245  Q
    ||    
T  24546741 aa 24546740  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 48097975 - 48098025
Alignment:
Q  194 ttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacaca 244  Q
    |||||||||||||||||||||  ||||||||||||||  ||||||||||||    
T  48097975 ttattctttaaaaaagttaaatagttcaatttccaatacattaaatacaca 48098025  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 2818355 - 2818424
Alignment:
Q  167 actctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtatta 236  Q
    ||||||||||||| ||||| || ||| ||||||||| |||| || |||  ||||||||||||||| ||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatgcatta 2818424  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 54290888 - 54290809
Alignment:
Q  166 cactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||||||||| |||| || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  54290888 cactctttaagcatgataaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaa 54290809  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 43803965 - 43804043
Alignment:
Q  167 actctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||||||| |||| |   |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  43803965 actctttaagcatgataaattggaaagttattctttaaaaaagtcaaacaattcaatttccaatgtattaaatacacaa 43804043  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 11692729 - 11692804
Alignment:
Q  167 actctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaataca 242  Q
    ||||||||||||| ||||| ||  || ||||||||||||||||| |||  ||| ||||| ||||||||||||||||    
T  11692729 actctttaagcatattaaattaaaaaattattctttaaaaaagtgaaatagtttaatttgcaatgtattaaataca 11692804  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 31625427 - 31625372
Alignment:
Q  190 gaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||||||||||||||| |||| |||| || || ||||||||||||||||||    
T  31625427 gaagttattctttaaaaaagtcaaactgttctatgtcaaatgtattaaatacacaa 31625372  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 37708432 - 37708497
Alignment:
Q  166 cactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatg 231  Q
    |||||||||||||| ||||| || | | ||| ||||||||||||||||||  |||||||| |||||    
T  37708432 cactctttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatg 37708497  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 53040462 - 53040543
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||||||| ||  |||| || ||| ||||| ||||||||| | |||   |||||||||||||||||| |||||||||    
T  53040462 gacactctttaaggattctaaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattgaatacacaa 53040543  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 42939521 - 42939553
Alignment:
Q  143 tttgtgaacgagtgttcttgagacactctttaa 175  Q
    ||||| |||||||||||||||||||||||||||    
T  42939521 tttgttaacgagtgttcttgagacactctttaa 42939553  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 31264992 - 31265071
Alignment:
Q  166 cactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||||||||| |||| || ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  31264992 cactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacaattcaatttccaatgtattaaatacacaa 31265071  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 37564445 - 37564364
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||||| |||| |||| || ||| ||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  37564445 gacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaatagttcaatttccaatgtattaaatacacaa 37564364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 25279922 - 25279999
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaataca 242  Q
    ||||||||||||||||| |||| || ||||||||||||| ||||||| |||   |||||||||||||||||||||||||    
T  25279922 gacactctttaagcatgctaaattaggaagttattcttt-aaaaagtcaaataattcaatttccaatgtattaaataca 25279999  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 11533205 - 11533292
Alignment:
Q  144 ttgtgaacgagtgttcttgagacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatg 231  Q
    |||| |||||||||| | | |||||||||||| ||||||||| ||  || |||||||||||||| || |||   ||||||||||||||    
T  11533205 ttgttaacgagtgttttcgggacactctttaaacatgttaaattaataaattattctttaaaaatgtcaaagttttcaatttccaatg 11533292  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 1502783 - 1502706
Alignment:
Q  165 acactctttaagcatgttaaactatgaagttattctttaaaaaagtt-aaacggttcaatttccaatgtattaaatac 241  Q
    ||||||||||| |||  |||| || ||| ||||||||||||||| || |||| ||||||||| ||||| |||||||||    
T  1502783 acactctttaaacattctaaattaggaaattattctttaaaaaaattcaaacagttcaattttcaatgcattaaatac 1502706  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 32859780 - 32859859
Alignment:
Q  166 cactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||| |||| |||| || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  32859780 cactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaa 32859859  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 18684333 - 18684436
Alignment:
Q  144 ttgtgaacgagtgttcttgagacactcttt--aagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatac 241  Q
    |||| |||||||| ||| | ||||||||||  ||||||| |||| || ||||||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  18684333 ttgttaacgagtgctctcgggacactcttttaaagcatgctaaattaggaagttattctttaaaaaagtcatacaattcaatttccaatgtattaaatac 18684432  T
Q  242 acaa 245  Q
    ||||    
T  18684433 acaa 18684436  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 40348055 - 40347979
Alignment:
Q  169 tctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||||| || |  | ||||||||||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  40348055 tctttaagcatgctagatcaggaagttattctttaaaaaagtcaaacagttcaatttttaatgtattaaatacacaa 40347979  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 44195502 - 44195580
Alignment:
Q  166 cactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacaca 244  Q
    |||||||||||||| ||||| || ||| |||||||||| ||||||||||   |||||||| ||||| ||||||||||||    
T  44195502 cactctttaagcattttaaattaagaaattattctttacaaaagttaaataattcaatttacaatgcattaaatacaca 44195580  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 14663296 - 14663212
Alignment:
Q  161 tgagacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||| ||||||||| ||||| ||  || |||||||||||| |||| |||  ||||||||||||||  ||||||| |||||    
T  14663296 tgagacactttttaagcattttaaattaaaaaattattctttaaataagtcaaatagttcaatttccaatacattaaatgcacaa 14663212  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 25437988 - 25437906
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaa-gttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  25437988 gacactctttaagcatgctaaattaagaagttattctttaaaaaaagtgaaacagttcaatttccaatgtattaaatacacaa 25437906  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 24041133 - 24041058
Alignment:
Q  167 actctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaataca 242  Q
    ||||||||||||| | ||| |||||| ||||||||||||||| | |||  ||| ||||||||||  ||||||||||    
T  24041133 actctttaagcatatcaaattatgaaattattctttaaaaaattcaaatagtttaatttccaatacattaaataca 24041058  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 7210952 - 7211002
Alignment:
Q  194 ttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacaca 244  Q
    |||||| |||||||||||||||  ||||| |||||||||||| ||||||||    
T  7210952 ttattcgttaaaaaagttaaacacttcaaattccaatgtattgaatacaca 7211002  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 34032223 - 34032153
Alignment:
Q  144 ttgtgaacgagtgttcttgagacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaa 214  Q
    |||| ||||||||| |||| | ||||||||||||||  |||| || | | |||||||||||||||||||||    
T  34032223 ttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaa 34032153  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 27310325 - 27310260
Alignment:
Q  166 cactctttaagcatgt-taaactatgaagttattctttaaaaaagttaaacggttcaatttccaat 230  Q
    |||||||||||||| | |||| |||||| |||||||||||||||||  |||  |||||||||||||    
T  27310325 cactctttaagcatttataaattatgaaattattctttaaaaaagtctaacaattcaatttccaat 27310260  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 14309195 - 14309119
Alignment:
Q  169 tctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    ||||||||||| ||||| || | ||||||||||||||||  | |||   |||||||||||||| ||||| |||||||    
T  14309195 tctttaagcatattaaattaagtagttattctttaaaaatatcaaagttttcaatttccaatgcattaattacacaa 14309119  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 46592579 - 46592501
Alignment:
Q  167 actctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||||||| |||| || ||||||||||||||||||||| |||| ||| |||||||||| ||||||||| ||||    
T  46592579 actctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacagtttaatttccaatatattaaatagacaa 46592501  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 5251012 - 5250933
Alignment:
Q  166 cactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacacaa 245  Q
    |||||||||| |||  |||| || ||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||    
T  5251012 cactctttaaacatactaaattaggaagttattctttaaaaaagtcaaacagtttaattttcaatgtattaaatacacaa 5250933  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 5423854 - 5423781
Alignment:
Q  169 tctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaataca 242  Q
    ||||||||||| ||||| ||  || |||||||||||||||||||||  ||||||||| ||||| ||||||||||    
T  5423854 tctttaagcattttaaattagaaaattattctttaaaaaagttaaatagttcaattttcaatgcattaaataca 5423781  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 39912323 - 39912262
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaattt 225  Q
    ||||||||||||||||| |||| || ||||||||| ||||||||||| ||||  ||||||||    
T  39912323 gacactctttaagcatgctaaattaggaagttattatttaaaaaagtcaaacaattcaattt 39912262  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 10370494 - 10370419
Alignment:
Q  167 actctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaataca 242  Q
    |||||||||| || ||||| |||||| ||||| |||||||||||||||   ||||||||| ||  |||||||||||    
T  10370494 actctttaagtattttaaattatgaaattattttttaaaaaagttaaataattcaatttctaaaatattaaataca 10370419  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 4521091 - 4521054
Alignment:
Q  194 ttattctttaaaaaagttaaacggttcaatttccaatg 231  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  4521091 ttattctttaaaaaagttaaacatttcaatttccaatg 4521054  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 1600972 - 1601020
Alignment:
Q  194 ttattctttaaaaaagttaaacggttcaatttccaatgtattaaataca 242  Q
    |||||||||||||| ||||||  |||||||||| |||| ||||||||||    
T  1600972 ttattctttaaaaatgttaaatagttcaatttcaaatgcattaaataca 1601020  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 44442243 - 44442323
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacaca 244  Q
    |||||| |||||| || ||||| || ||| ||||||||||||||||| |||   |||||||| ||||  ||||||||||||    
T  44442243 gacactttttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacaca 44442323  T

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Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 219183 - 219261
Alignment:
Q  164 gacactctttaagcatgttaaactatgaagttattctttaaaaaagttaaacggttcaatttccaatgtattaaataca 242  Q
    |||| ||||||||||| ||||| || ||| |||||||||| |||||| |||  ||||||||||||||| ||||||||||    
T  219183 gacattctttaagcattttaaattaggaaattattctttacaaaagtcaaatagttcaatttccaatgcattaaataca 219261  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 25028781 - 25028731
Alignment:
Q  194 ttattctttaaaaaagttaaacggttcaatttccaatgtattaaatacaca 244  Q
    ||||||||||||||||| |||| ||||||||| ||||| ||| ||||||||    
T  25028781 ttattctttaaaaaagtcaaacagttcaattttcaatgcattgaatacaca 25028731  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 189063 - 189112
Alignment:
Q  165 acactctttaagcatgttaaactatgaagttattctttaaaaaagttaaa 214  Q
    ||||||||||||||| ||||| || | | |||||||||||||||||||||    
T  189063 acactctttaagcattttaaaataagcaattattctttaaaaaagttaaa 189112  T

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