View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321-Insertion-9 (Length: 343)
Name: NF3321-Insertion-9
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 129 - 335
Target Start/End: Original strand, 49011199 - 49011406
Alignment:
| Q |
129 |
aagatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagctaagtacaatccttgttcaatgcccacaaa |
228 |
Q |
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| T |
49011199 |
aagatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagctaagtacaatccttgttcaattcccacaaa |
49011298 |
T |
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| Q |
229 |
agcagctaaccacagacagaag-aacgaagccatatatcccacataaaatgtgacatattctagctacttcatagaatttgcattattattaatatcatc |
327 |
Q |
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| T |
49011299 |
agcagctaaccacagacagaagaaacgaagccatatatcccacataaaatttgacatattctagctacttcatagaatttgcattattattaatatcatc |
49011398 |
T |
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| Q |
328 |
aacacgta |
335 |
Q |
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|||||||| |
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| T |
49011399 |
aacacgta |
49011406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 49011076 - 49011151
Alignment:
| Q |
8 |
caaaaaacactcagttataccaaatttatttnnnnnnnnttggatcaaaatattgaaattgatcttattcgtatag |
83 |
Q |
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| T |
49011076 |
caaaaaacattcagttataccaaatttatttaaaaaaaattggatcaaaatattgaaattgatcttattcgtatag |
49011151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 38183845 - 38184052
Alignment:
| Q |
129 |
aagatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagcta--agtacaatccttgttcaatgcccaca |
226 |
Q |
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| T |
38183845 |
aagatgtatgcatctcaccatattgatttaacatctaactatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgcccaca |
38183944 |
T |
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| Q |
227 |
aaagcagctaaccacagacagaagaacgaagccatatatcccacataaaatgtgacatattctagctacttcatagaatttgc---attattattaatat |
323 |
Q |
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|||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
38183945 |
aaagcatctaaccacagacagaagaaagaaacaatatatcccacataaaatgtgacacattctagctacttcatagaatttgcattattattattaatat |
38184044 |
T |
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| Q |
324 |
catcaaca |
331 |
Q |
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|||||||| |
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| T |
38184045 |
catcaaca |
38184052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 38183680 - 38183716
Alignment:
| Q |
47 |
ttggatcaaaatattgaaattgatcttattcgtatag |
83 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |
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| T |
38183680 |
ttggataaaaatattgaaattgatcttattcatatag |
38183716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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