View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321R-Insertion-1 (Length: 989)
Name: NF3321R-Insertion-1
Description: NF3321R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321R-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 346 - 966
Target Start/End: Original strand, 41104219 - 41104861
Alignment:
| Q |
346 |
gctagtgtcaaacttgtcaacttaagacatgtatgtaatccaatccacttgcaacttggtactccactcttctttacttgctcatatcatatatcgccct |
445 |
Q |
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| T |
41104219 |
gctagtgtcaaacttgtcaacttaagacatgtatgtaatccaatccacttgcaacttggtactccactcttctttacttgctcatatcatat--cgccct |
41104316 |
T |
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| Q |
446 |
agtccttacattacaatgacattagcatgaccttttccaactatattttcattcaaacgcgttcatattcagacaaccataacatcacacgaaaccggcc |
545 |
Q |
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| T |
41104317 |
agtccttacattacaatgacattagcatgaccttttccaactctattttcattcaaacgcgttcatattcagacaaccataacatcacacgaaaccggcc |
41104416 |
T |
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| Q |
546 |
gtaggattaaaatgtttattttactcttttcgaataagccaaattttcccaacaaatgcatttttacattaaattattcttctcttcatcattgaccaga |
645 |
Q |
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| T |
41104417 |
gtaggattaaaatgtttattttactcttttggaataagccaaattttcccaacaaatgcatttttacattaaattattcttctcttcatcattgaccaga |
41104516 |
T |
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| Q |
646 |
tccttctttacatatatttcatgtcagcccttatattaatcccccaagtttataagaattatgcttatctagtcctaattccatt--------------- |
730 |
Q |
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| T |
41104517 |
tccttctttacatatatttcatgtcagcccttatattaatcccccaagtttataagaattatgcttatctagtcctaattccattcatcaccctctctat |
41104616 |
T |
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| Q |
731 |
-------caacgaactcctctatactctatctatactataattatattactcctcacaccccttttcctcatctaatcacaatacaatttttattataga |
823 |
Q |
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| T |
41104617 |
ctagctgcaacgaactcctctatactctatctatactataattatattactcctcacaccccttttcctcatctaatcacaatacaatttttattataga |
41104716 |
T |
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| Q |
824 |
acaaaatgaatcaattcccagacattcctacgggaagatcaccaagaagagaacttcaaggtccacgtcctacacctcttagaatacacaaggactctca |
923 |
Q |
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| T |
41104717 |
acaaaatgaatcaattcccagacattcctacaggaagatcaccaagaagagaacttcaaggtccacgtcctacacctcttagaatacacaaggactctca |
41104816 |
T |
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| Q |
924 |
c-aaatcaagaaaccaccattggcg-cacagcagcagcaacaaca |
966 |
Q |
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| T |
41104817 |
caaaatcaagaaaccaccattggcgccacagcagcagcagcaaca |
41104861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 41103830 - 41104099
Alignment:
| Q |
8 |
ataaaagaggttgtaatcaacttttaataagtatacgtaattaagtatcccacgaaatggaagagtggttgatttaaagtgtgaaaaatgagtaaagaaa |
107 |
Q |
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| T |
41103830 |
ataaaagagtttgtaatcaacttttaataagtatacgtaattaagtatcccacgaaatggaagagtggttgatttaaagtgtgaaaaatgagtacagaaa |
41103929 |
T |
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| Q |
108 |
tacacatcaatgatagtcactggtttgannnnnnnnnnnngaagatatgtcttgcctttatttgcccaattggaaggattaccttatgtaagaagatacg |
207 |
Q |
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| T |
41103930 |
tacacatcaatgatagtcactggtttgatttttcatttttgaagatatgtcttgcctttatttgcccaattggaaggattaccttatgtaagaagatacg |
41104029 |
T |
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| Q |
208 |
aacagattttaaaccatgaggaggaattctaattctaggtcgtttcttccattagattcaccgtatacaa |
277 |
Q |
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| T |
41104030 |
aacagattttaaaccatgaggaggaattctaattctaggtcgtttcttccattagattcaccgtatacaa |
41104099 |
T |
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