View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321R-Insertion-2 (Length: 826)

Name: NF3321R-Insertion-2
Description: NF3321R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321R-Insertion-2
NF3321R-Insertion-2
[»] chr3 (2 HSPs)
chr3 (296-826)||(428378-428906)
chr3 (8-228)||(428156-428376)
[»] chr2 (2 HSPs)
chr2 (67-256)||(30643198-30643379)
chr2 (763-826)||(30640611-30640674)
[»] chr7 (1 HSPs)
chr7 (11-78)||(18388275-18388342)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 296 - 826
Target Start/End: Original strand, 428378 - 428906
Alignment:
Q  296 caaaagccaatgcaagatgataaccaagtcaagagaagagtaaaaggtcggtgtttataggttagatgattatggcattgtaatttgtaggttattttac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  428378 caaaagccaatgcaagatgataaccaagtcaagagaagagtaaaaggtcggtgtttataggttagatgattatggcattgtaatttgtaggttattttac 428477  T
Q  396 attatgacataacaagttgttaattgaaatgattgtgttcttggtaatgattaattgttgaaaagttgactcctaaaccacaagaaccctacaatagagg 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  428478 attatgacataacaagttgttaattgaaatgattgtgttcttggtaatgattaattgttgaaaagttgactcctaaaccacaagaactctacaatagagg 428577  T
Q  496 caaagtcnnnnnnnnnnnnngttttacaagtgactcaatttcatg----tgnnnnnnnnngttaaagatggactcaaattcaagttagaatatattttcg 591  Q
    |||||||             |||||||||||||||||||||||||    |          ||||||||||||||||||||||||||||||||||||||||    
T  428578 caaagtc--ttttttgttttgttttacaagtgactcaatttcatgtatttttttttttttgttaaagatggactcaaattcaagttagaatatattttcg 428675  T
Q  592 cagtaacagaaataaannnnnnnatttctatgatattcatacaagagannnnnnnnagtagaaaattcataaannnnnnnnnnnntaaggaaataaaaaa 691  Q
    ||||||||||||||||       |||||||||||||||||||||||||        |||||||||||||||||            |||||||||||||||    
T  428676 cagtaacagaaataaa-aattttatttctatgatattcatacaagagattttttttagtagaaaattcataaa----agagagagtaaggaaataaaaaa 428770  T
Q  692 ttaaaatggaatcgtgaaatttcttatcaacc-aaaaaatcataagcatcgtttcagggaatagtgaatagacattaatagtgaggaacatgcttcctta 790  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  428771 ataaaatggaatcgtgaaatttcttatcaaccaaaaaaatcataagcatcgtttcagggaatagtgaatagacattaatagtgaggaacttacttcctta 428870  T
Q  791 ttttgtgatttcagatctttgaaccattatcctttt 826  Q
    ||||||||||||||||||||||||||||||||||||    
T  428871 ttttgtgatttcagatctttgaaccattatcctttt 428906  T

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Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 428156 - 428376
Alignment:
Q  8 atgaaattctattcatcatgatatctcatcttaagaaggatgattcataaataaccaagaataaacaaaataaaaaataatcaagctaaatagaagcggt 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  428156 atgaaattctatttatcatgatatctcatcttaagaaggatgattcataaataaccaagaataaacaaaataaaaaataatcaagctaaatagaagcggt 428255  T
Q  108 acctggttgaactgacggatgtttgcatagccgcttcaacacgaaggcatgtgccaaggcaaaatagaggaaatatattaattaacatgcattgcttgca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  428256 acctggttgaactgacggatgtttgcatagccgcttcaacacgaaggcatgtgccaatgcaaaatagaggaaatatattaattaacatgcattgcttgca 428355  T
Q  208 atgtgttatatattcgcttaa 228  Q
    |||||||||||||||||||||    
T  428356 atgtgttatatattcgcttaa 428376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 67 - 256
Target Start/End: Complemental strand, 30643379 - 30643198
Alignment:
Q  67 aataaacaaaataaaaaataatcaagctaaatagaagcggtacctggttgaactgacggatgtttgcatagccgcttcaacacgaaggcatgtgccaagg 166  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||    
T  30643379 aataaccaaaataaaaaataatcaagttaaaaagaagcggtacctggttgaaccgacggatgtttgcatcgccgcttcaacacgaaggccagtgccaagg 30643280  T
Q  167 caaaatagaggaaatatattaattaacatgcattgcttgcaatgtgttatatattcgcttaatcaataaaagacaaggccattagcagta 256  Q
     |||||||||||||||||    ||||||| ||    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  30643279 aaaaatagaggaaatata----ttaacataca----ttgcaatgtgttatatattcacttaatcaataaaagacaaggctattagcagta 30643198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 763 - 826
Target Start/End: Complemental strand, 30640674 - 30640611
Alignment:
Q  763 cattaatagtgaggaacatgcttccttattttgtgatttcagatctttgaaccattatcctttt 826  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  30640674 cattaatagtgaggaacttacttccttattttgtgatttcagatctttgaaccattatcctttt 30640611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 18388342 - 18388275
Alignment:
Q  11 aaattctattcatcatgatatctcatcttaagaaggatgattcataaataaccaagaataaacaaaat 78  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| | ||||||| |||| |||||||    
T  18388342 aaattctatttatcatgatatctcatcttaacaaggatgattcatcagtaaccaaaaatagacaaaat 18388275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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