View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321R-Insertion-3 (Length: 766)

Name: NF3321R-Insertion-3
Description: NF3321R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321R-Insertion-3
NF3321R-Insertion-3
[»] chr5 (1 HSPs)
chr5 (9-766)||(32894742-32895505)


Alignment Details
Target: chr5 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 9 - 766
Target Start/End: Original strand, 32894742 - 32895505
Alignment:
Q  9 caacattagatgaaaatactcatctttattattatgagacacatttaaaaaagaatgtattgtttaattaattatttcagttgcttcaagaatttcctat 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32894742 caacattagatgaaaatactcatcgttattattatgagacacatttaaaaaagaatgtattgtttaattaattatttcagttgcttcaagaatttcctat 32894841  T
Q  109 atatatgtgactcggtatgttctaattattattggtcgtgatgtcaaacattttttaatgtaagtattcataaatcatcataaacatatgcgaaaaacac 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32894842 atatatgtgactcggcatgttctaattattattggtcgtgatgtcaaacattttttaatgtaagtattcataaatcatcataaacatatgcgaaaaacac 32894941  T
Q  209 aatattttt-attaaaaaattgtataccataaacttaaaaagtttacgttatatcttgataacataaaggtgaggtgtggatgnnnnnnntagagaagaa 307  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |       ||||||||||    
T  32894942 aatattttttattaaaaaattgtataccataaacttaaaa-gtttacgttatatcttgataacataaaggtgaggtgtggaagaaaaaaatagagaagaa 32895040  T
Q  308 tatttttatccgaataggaaataatgtggaggtgtggtacagatgtaagggcatggataatattatcttcccttcatttttctttaaaataaccattctt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32895041 tatttttatccgaataggaaataatgtggaggtgtggtacagatgtaaggacatggataatattatcttcccttcatttttctttaaaataaccattctt 32895140  T
Q  408 ggctattaccaacccgtgagtagtgtgtacccaatagaccacaagatgggtgggaattttagggnnnnnnnnnnnnna------ggaaagaattttaggt 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                    ||||||||||||||||    
T  32895141 ggctattaccaacccgtgagtagtgtgtacccaatagaccacaagatgggtgagaattttagggtttttttttttttttttttgggaaagaattttaggt 32895240  T
Q  502 tgagctgcttctcttatttcacacttttgcctaaaccttaatattaaaattgtgattcattgattattgtaaatgaaattcaaaatattcttaagcagaa 601  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32895241 tgagtcgcttctcttatttcacacttttgcctaaaccttaatattaaaattgtgattcattggttattgtaaatgaaattcaaaatattcttaagcagaa 32895340  T
Q  602 ggcgcagagaaaactatatgttttcaatattttttcctgtgcaaaattttgttttcatcttggaaagttgaatgtgtaaggacaaaattaaaacctgtat 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32895341 ggcgcagagaaaactatatgttttcaatattttttcctgtgcaaaattttgttttcatcttggaaagttgaatgtgtaaggacaaaattaaaacctgtat 32895440  T
Q  702 tttttaagagtaagattacaacagaatttagcaaaaatccaaatctatccacctcattgccaatc 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32895441 tttttaagagtaagattacaacagaatttagcaaaaatccaaatctatccacctcattgccaatc 32895505  T

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