View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321R-Insertion-4 (Length: 745)

Name: NF3321R-Insertion-4
Description: NF3321R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321R-Insertion-4
NF3321R-Insertion-4
[»] chr4 (5 HSPs)
chr4 (389-745)||(27637431-27637787)
chr4 (391-745)||(37353626-37353980)
chr4 (391-745)||(37365600-37365954)
chr4 (502-683)||(12292496-12292680)
chr4 (513-732)||(12242707-12242929)
[»] chr8 (1 HSPs)
chr8 (22-377)||(27514236-27514589)
[»] chr1 (1 HSPs)
chr1 (8-312)||(39209354-39209654)
[»] chr2 (3 HSPs)
chr2 (502-728)||(34697785-34698014)
chr2 (502-728)||(34720197-34720426)
chr2 (511-592)||(27909926-27910007)
[»] chr6 (1 HSPs)
chr6 (233-360)||(23016965-23017092)
[»] chr5 (1 HSPs)
chr5 (317-376)||(36407015-36407074)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 389 - 745
Target Start/End: Original strand, 27637431 - 27637787
Alignment:
Q  389 acaaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaa 488  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |     
T  27637431 acaaaataaatgaaacatcatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgagctattgtaataacatttttgacag 27637530  T
Q  489 taatatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg 588  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27637531 taatatcaattttaaatcgaattctgaatctcgataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg 27637630  T
Q  589 aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27637631 aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct 27637730  T
Q  689 gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttac 745  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27637731 gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttac 27637787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 391 - 745
Target Start/End: Original strand, 37353626 - 37353980
Alignment:
Q  391 aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata 490  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |  | |||||  |||  |||||| | ||    
T  37353626 aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta 37353725  T
Q  491 atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa 590  Q
    |||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37353726 atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa 37353825  T
Q  591 gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga 690  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |    
T  37353826 gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta 37353925  T
Q  691 cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttac 745  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  37353926 cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttac 37353980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 391 - 745
Target Start/End: Original strand, 37365600 - 37365954
Alignment:
Q  391 aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata 490  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |  | |||||  |||  |||||| | ||    
T  37365600 aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta 37365699  T
Q  491 atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa 590  Q
    |||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37365700 atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa 37365799  T
Q  591 gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga 690  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |    
T  37365800 gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta 37365899  T
Q  691 cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttac 745  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  37365900 cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttac 37365954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 502 - 683
Target Start/End: Complemental strand, 12292680 - 12292496
Alignment:
Q  502 aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct 601  Q
    ||||| |||||||||||||||||| ||||||||||  ||||||||| |||||||| | || ||||||||| | |||||||||||||||||| ||||||||    
T  12292680 aaatcaaattctgaatctcaataacacccttctttttcattccacacattggacaggcttcgagtaaagcttcacatgctttgcatgaagaaagatgcct 12292581  T
Q  602 acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaaca---cattgttttcacgtcttacacgcttttca 683  Q
    |||||| | |||||||||| |    | |||||| |||||||||| ||||||||    ||||||| ||||||| ||||||||||||    
T  12292580 acatggtataaataagacatctgaggagtttgtgttacactttggacaaaacatagtattgtttccacgtctgacacgcttttca 12292496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 513 - 732
Target Start/End: Complemental strand, 12242929 - 12242707
Alignment:
Q  513 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 612  Q
    ||||| ||||||| ||| |||||| |||||||||| |||||||||| || |||| |||| | ||| |||||||||||||| ||||| |||||||||||||    
T  12242929 tgaatttcaataacaccattcttttccattccacagattggacaagctttgagtgaagcttcacacgctttgcatgaagaaagatgtctacatggcagaa 12242830  T
Q  613 ataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccaca 709  Q
    |||||||| |   || | |||| ||||| |||| |||||||   | ||||||| ||||||| ||||| ||||||  ||| || || || |||||||| ||    
T  12242829 ataagacatccgaagagcttgtgttacattttggacaaaacataatattgtttccacgtctaacacgtttttcaattcttacatcatcattttcaccgca 12242730  T
Q  710 acttgattccgcgtcattttcca 732  Q
    || ||| |  || ||||||||||    
T  12242729 acatgagtttgcatcattttcca 12242707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 27514236 - 27514589
Alignment:
Q  22 tttatgttggtggtgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtca-cctcttgtgcagtgtgtgtgcaccgtc 120  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    |||||||    
T  27514236 tttatgttggtgatgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcagcaattggtcaacctcttgtgcagtgtg----caccgtc 27514331  T
Q  121 caatgtggagttatcatcatcacctctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggt-acatg 219  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  27514332 caatgtggagttatcatcatgacccctgagcataaacaacgtgatgcagcaggtttgaaatttccattctccaacatggcgagcaatgtatggttacatg 27514431  T
Q  220 catgttttacaacataagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggatttt 319  Q
    || |||||||||||||||||||| ||||||||||||||||||||| |||| ||| || ||||||||||||| | |||||||||| |||||||||||||||    
T  27514432 caagttttacaacataagggtataaacgtaattttgtcccaaaaactcattaattaaatttttcccgcccgattaactgcagttgaaaatgatggatttt 27514531  T
Q  320 caaaggattaaattagggcaaacttgcaggtttgtgttccatttataatattatgata 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514532 caaaggattaaattagggcaaacttgcaggtttgtgttccatttataatattatgata 27514589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 39209654 - 39209354
Alignment:
Q  8 agggagaagacacctttatgttggtggtgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgcagtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39209654 agggagaagacacctttatgttggtggtgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgcagta 39209555  T
Q  108 tgtgtgcaccgtccaatgtggagttatcatcatcacctctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaat 207  Q
    ||    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39209554 tg----caccgtccaatgtggagttatcatcatcacctatgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacattgcgagcaat 39209459  T
Q  208 gtatggtacatgcatgttttacaacataagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaa 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||    
T  39209458 gtatggtacatgcatgttttacaacataagggtaccaacgtaattttgtcccaaaaattcataaattaaatttttcccgcccggcgaactgcagttaaaa 39209359  T
Q  308 atgat 312  Q
    |||||    
T  39209358 atgat 39209354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 502 - 728
Target Start/End: Original strand, 34697785 - 34698014
Alignment:
Q  502 aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct 601  Q
    |||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | ||||  ||||||| |||| ||||||||    
T  34697785 aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct 34697884  T
Q  602 acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc 698  Q
    |||||| |||||||||||||||| |  ||||||||||||||||||||||||   || |||||  || | ||| |  ||||||||||||||  |||||||     
T  34697885 acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca 34697984  T
Q  699 ttttcaccacaacttgattccgcgtcattt 728  Q
     ||||||| |||| ||||||||||||||||    
T  34697985 ctttcaccgcaacatgattccgcgtcattt 34698014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 502 - 728
Target Start/End: Original strand, 34720197 - 34720426
Alignment:
Q  502 aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct 601  Q
    |||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | ||||  ||||||| |||| ||||||||    
T  34720197 aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct 34720296  T
Q  602 acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc 698  Q
    |||||| |||||||||||||||| |  ||||||||||||||||||||||||   || |||||  || | ||| |  ||||||||||||||  |||||||     
T  34720297 acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca 34720396  T
Q  699 ttttcaccacaacttgattccgcgtcattt 728  Q
     ||||||| |||| ||||||||||||||||    
T  34720397 ctttcaccgcaacatgattccgcgtcattt 34720426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 592
Target Start/End: Original strand, 27909926 - 27910007
Alignment:
Q  511 tctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaaga 592  Q
    ||||||||||||||| | |||||||| |||||||||| |||||||||  || ||||||||| | |||  |||||||||||||    
T  27909926 tctgaatctcaataacatccttcttttccattccacatattggacaaacttcgagtaaagcttcacacactttgcatgaaga 27910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 233 - 360
Target Start/End: Complemental strand, 23017092 - 23016965
Alignment:
Q  233 ataagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggattttcaaaggattaaat 332  Q
    |||||||||| || |||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  23017092 ataagggtataaatgtaattttgtcccaaaaactcattaattaaatttttcccgcccgatgaactgcagttgaaaatgatggattttcaaaggattaaat 23016993  T
Q  333 tagggcaaacttgcaggtttgtgttcca 360  Q
    ||||| ||||||||||||||||||||||    
T  23016992 tagggaaaacttgcaggtttgtgttcca 23016965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 36407015 - 36407074
Alignment:
Q  317 tttcaaaggattaaattagggcaaacttgcaggtttgtgttccatttataatattatgat 376  Q
    ||||||||||  ||||||||||||| |||||| || ||||||||||||||||||||||||    
T  36407015 tttcaaaggaacaaattagggcaaatttgcagcttggtgttccatttataatattatgat 36407074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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