View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321R-Insertion-8 (Length: 254)
Name: NF3321R-Insertion-8
Description: NF3321R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321R-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 49011080 - 49010840
Alignment:
| Q |
9 |
ttttggggtatgactagaaagaataaaataatgtaatactacaaggtgattgcatattagacttaagtgtcagtcaatttatgcagaatttattttagga |
108 |
Q |
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| T |
49011080 |
ttttggggtatggctagaaagaataaaataat-----actacaaggtgattgcatattagacttaagtgtcagtcaatttatgcagaatttattttatga |
49010986 |
T |
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| Q |
109 |
ccatttatggtattactttccaatcttccaaggtgattgcatattgcaatcttatttctggaacctgatcccaatcccatacctggtggtaaagctttat |
208 |
Q |
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| T |
49010985 |
ccatttatggtattactttccaatcttccaaggtgattgcatattataatcttatttctggaacctgatcccaatcccatacctggtggtaaagctttat |
49010886 |
T |
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| Q |
209 |
tgatgttcccagtgcgactcaacaacatacttttgttcaagtgata |
254 |
Q |
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| T |
49010885 |
tgatgttcccagtgcgactcaacaacatacttttgttcaagtgata |
49010840 |
T |
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Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 38183614 - 38183439
Alignment:
| Q |
41 |
gtaatactacaaggtgattgcatattagacttaagtgtcagtcaatttatgcagaatttattttaggaccatttatggtattactttccaatcttccaag |
140 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||| |
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| T |
38183614 |
gtaatactacaaggtgattgcatattagacgtaagtgtcagtcaatttatgcagaatttgttttaggaccatatatggtattacttttcaatcttacaag |
38183515 |
T |
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| Q |
141 |
gtgattgcatattgcaatctta-tttctggaacctgatcccaatcccatacctggtggtaaagctttattgatgttc |
216 |
Q |
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| T |
38183514 |
gtgattgcatattacaatcatactttctggaacctgat-ccaatcccatacctggtggtaaagctctattgatgttc |
38183439 |
T |
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