View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321_high_10 (Length: 237)

Name: NF3321_high_10
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321_high_10
NF3321_high_10
[»] chr4 (3 HSPs)
chr4 (1-221)||(53422309-53422529)
chr4 (1-86)||(17884015-17884104)
chr4 (1-53)||(39178321-39178373)
[»] chr1 (1 HSPs)
chr1 (1-88)||(4699647-4699735)
[»] chr2 (3 HSPs)
chr2 (1-54)||(43259781-43259834)
chr2 (2-72)||(41407023-41407097)
chr2 (1-53)||(28251941-28251993)
[»] chr6 (2 HSPs)
chr6 (2-83)||(31776312-31776396)
chr6 (1-50)||(13908189-13908238)
[»] chr3 (2 HSPs)
chr3 (19-86)||(1816548-1816619)
chr3 (1-42)||(25964389-25964430)
[»] chr8 (2 HSPs)
chr8 (1-70)||(926434-926508)
chr8 (4-53)||(42215377-42215426)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 53422309 - 53422529
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtttttgtataatcagttgttttcataagctataacggagagcttatagtgaatcagaata 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53422309 aagctatttctacaacacaagataaaataaattcaaacagtttttgtataatcagttgttttcataagctataacggagagcttatagtgaatcagaata 53422408  T
Q  101 tgaaaataaatactgaattattgtaatacctcttgctcttttgccaatttcagaaaacggtggcggaccgttagccataatgaatgaggatgaaatgtgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  53422409 tgaaaataaatactgaattattgtaatacctcttgctcttttgccaatctcagaaaacggtgctggaccgttagccataatgaatgaggatgaaatgtgc 53422508  T
Q  201 taaaccctgcaaatgcaaaac 221  Q
    |||||||||||||||||||||    
T  53422509 taaaccctgcaaatgcaaaac 53422529  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 17884015 - 17884104
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtttttgtataa----tcagttgttttcataagctataacggagagcttat 86  Q
    |||||||||||| |||| ||||||||||||| | |||  ||||||||||||    ||||||||||||||||||||||  |||||||||||    
T  17884015 aagctatttctataacaaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagcttat 17884104  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39178373 - 39178321
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtttttgtataatc 53  Q
    |||||||||||| ||| |||||||||||||| | || ||||| ||||||||||    
T  39178373 aagctatttctataactcaagataaaataaagttaagcagttgttgtataatc 39178321  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4699735 - 4699647
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtttttgtataat-cagttgttttcataagctataacggagagcttatag 88  Q
    ||||||||||||||||||||||| ||||||| | ||||  |||||||||||| ||||| ||||||||| ||||  ||||||||||||||    
T  4699735 aagctatttctacaacacaagattaaataaagtcaaactatttttgtataatccagttattttcataaactatcccggagagcttatag 4699647  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43259781 - 43259834
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtttttgtataatca 54  Q
    |||||||||||| |||||||||||||||||| | ||| ||||||||||||||||    
T  43259781 aagctatttctataacacaagataaaataaagtcaaatagtttttgtataatca 43259834  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 41407023 - 41407097
Alignment:
Q  2 agctatttctacaacacaagataaaataaattgaaacagtttttgtata----atcagttgttttcataagctat 72  Q
    ||||||||||| |||||||||||||||||| | |||| | |||||||||    || |||||||||||||||||||    
T  41407023 agctatttctataacacaagataaaataaagttaaactgcttttgtatattctataagttgttttcataagctat 41407097  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28251993 - 28251941
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtttttgtataatc 53  Q
    ||||||||||||| | |||| |||||||||| | |||| ||||||||||||||    
T  28251993 aagctatttctaccatacaaaataaaataaagtcaaactgtttttgtataatc 28251941  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 31776396 - 31776312
Alignment:
Q  2 agctatttctacaacacaagataaaataaattgaaacagtttttgtataatca----gttgttttcataagctataacggagagct 83  Q
    ||||||||||| ||||||| |||||||||| | |||  ||||||||||||| |    |||||||||||||||||||| ||||||||    
T  31776396 agctatttctataacacaa-ataaaataaagtcaaattgtttttgtataattaataagttgttttcataagctataatggagagct 31776312  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13908189 - 13908238
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtttttgtata 50  Q
    ||||||||||||||||| ||||||||||||| | |||  |||||||||||    
T  13908189 aagctatttctacaacataagataaaataaaatcaaaaggtttttgtata 13908238  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 1816548 - 1816619
Alignment:
Q  19 aagataaaataaattgaaacagtttttgtataa----tcagttgttttcataagctataacggagagcttat 86  Q
    ||||||||||||| | |||| ||||||||||||    | ||||||||||||||||||||  |||||||||||    
T  1816548 aagataaaataaagtcaaactgtttttgtataagatataagttgttttcataagctatactggagagcttat 1816619  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25964389 - 25964430
Alignment:
Q  1 aagctatttctacaacacaagataaaataaattgaaacagtt 42  Q
    ||||||||| || |||| ||||||||||||||||||||||||    
T  25964389 aagctatttttataacaaaagataaaataaattgaaacagtt 25964430  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 926434 - 926508
Alignment:
Q  1 aagctatttctacaacacaagataaaataaa-ttgaaacagtttttgtataatc----agttgttttcataagct 70  Q
    |||||||||||| |||||||||||||||||| |  |||| |||||||||| |||    |||||||||||||||||    
T  926434 aagctatttctataacacaagataaaataaagtcaaaactgtttttgtattatctataagttgttttcataagct 926508  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 42215426 - 42215377
Alignment:
Q  4 ctatttctacaacacaagataaaataaattgaaacagtttttgtataatc 53  Q
    ||||||||||||||  |||||||||||| | |||| ||||||||||||||    
T  42215426 ctatttctacaacatgagataaaataaagtcaaactgtttttgtataatc 42215377  T

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