View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_high_12 (Length: 212)
Name: NF3321_high_12
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 12249308 - 12249190
Alignment:
| Q |
93 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
192 |
Q |
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| T |
12249308 |
caacttgagtggtgttgttgattttcaactcttttccaaacttcattggttgttttttctgtccctttcacataatagccaattatcactaacctttgaa |
12249209 |
T |
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| Q |
193 |
tcccatgtcagtttcattt |
211 |
Q |
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||| ||||||||||||||| |
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| T |
12249208 |
tccaatgtcagtttcattt |
12249190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 11993976 - 11994051
Alignment:
| Q |
16 |
cacattgtactgaatcagcaacttaaagtccgagatttgctgcagaatgggccaaaaaatggaataggatgaatca |
91 |
Q |
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| T |
11993976 |
cacattgtactgaatcagcaacttaaagtccgagatttgctgcagaatgggccaaaaaatggaacaggatgaatca |
11994051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 11994048 - 11994082
Alignment:
| Q |
177 |
atcactaacctttgaatcccatgtcagtttcattt |
211 |
Q |
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| T |
11994048 |
atcactaacctttgaatccaatgtcagtttcattt |
11994082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 42129709 - 42129600
Alignment:
| Q |
93 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
192 |
Q |
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| T |
42129709 |
caacttgagtgatgttattgattttcaacacttttccaaacttcaatatttgaaaactctgtcactttcacataatagccaattatcattaacatttgaa |
42129610 |
T |
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| Q |
193 |
tcccatgtca |
202 |
Q |
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|| |||||| |
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| T |
42129609 |
cccaatgtca |
42129600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 34239826 - 34239926
Alignment:
| Q |
93 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
192 |
Q |
| |
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|||||||||| ||||||| |||||||| ||||| | |||||| | |||| || ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34239826 |
caacttgagtggtgttgtcaattttcaagactttacaaaacttcaaaaattggattctctgtccctttcacataatagccaattatcactaaactttgaa |
34239925 |
T |
|
| Q |
193 |
t |
193 |
Q |
| |
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| |
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|
| T |
34239926 |
t |
34239926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 34232074 - 34232186
Alignment:
| Q |
93 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
192 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| ||||||| | ||| || | ||||||||||||| |||| ||||||||||||||||||||| |
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| T |
34232074 |
caacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaa |
34232173 |
T |
|
| Q |
193 |
tcccatgtcagtt |
205 |
Q |
| |
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||| ||||||||| |
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| T |
34232174 |
tccaatgtcagtt |
34232186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 41571279 - 41571391
Alignment:
| Q |
93 |
caacttgagtagtgttgttgattttcaacacttttccaaactttatttattgatttttctgtccctttcacataatagccaattatcactaacctttgaa |
192 |
Q |
| |
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|||||||||| || |||| ||||| || |||||||||||||| | |||| || ||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
41571279 |
caacttgagtggtattgtcaattttaaatacttttccaaacttcaaaatttgaattctctgtccctttcacataatagtcaattatcaccgaactttgaa |
41571378 |
T |
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| Q |
193 |
tcccatgtcagtt |
205 |
Q |
| |
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||| ||||||||| |
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| T |
41571379 |
tccaatgtcagtt |
41571391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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