View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_high_3 (Length: 451)
Name: NF3321_high_3
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 51199375 - 51199810
Alignment:
| Q |
1 |
cctaattcttattgtactttttggcaagtacacttataattttgaggactaaaatgactaattctaaggaataaactatttgcaataaagggtgcttaat |
100 |
Q |
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| T |
51199375 |
cctaattcttattgtactttttggcaagtgcacttataattttgaggactaaaataactaattctaaggaataaactatttgcaataaagggtgcttaat |
51199474 |
T |
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| Q |
101 |
ttaaatgtgctaaaaatgaaatgaattaggaagctgacccagttgaagagataagcagacaaaatggcaagtgaattgccttctatggctggcaaaaaca |
200 |
Q |
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| T |
51199475 |
ttaaatgtgctaaaaatgaaatgaattaggaagctgacccagttgaagagataagcagacaaaatggcaagtgaattgccttctatggctggcaaaaaca |
51199574 |
T |
|
| Q |
201 |
acggtttgtttctttgtttttcaagcttgtatgtttcggtttcaacgtgcttgttgttatagaggactgtccagctaccatgatttgattttttaaaata |
300 |
Q |
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| T |
51199575 |
acggtttgtttctttgtttttcaagcttgtatgtttcggtttcaacgtgcttgttgttatagaggactgtccagctaccatgatttgattttttaaaata |
51199674 |
T |
|
| Q |
301 |
caatgcatgtagcattccttctccttccacccaaatatgacttgacctaccaaagatagaatttgttgatttcaatcctccaaaaagtggatttggtcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51199675 |
caatgcatgtagcattccttctccttccacccaaatatgacttgacctaccaaagatagaatttgttgatttcaatcctccaaaaagtggatttggtcct |
51199774 |
T |
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| Q |
401 |
gcacattatatattaatgtagccattagcaatacat |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51199775 |
gcacattatatattaatgtagccattagcaatacat |
51199810 |
T |
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