View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3321_high_5 (Length: 308)

Name: NF3321_high_5
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3321_high_5
NF3321_high_5
[»] chr6 (2 HSPs)
chr6 (1-308)||(32371680-32371987)
chr6 (13-173)||(32364989-32365147)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 32371680 - 32371987
Alignment:
Q  1 aaggcataactctgccttattttcaccttggaattgctgcaattcatgaatgaataaatactgtttggaattgtatttatatcatggttggaaaactcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| || ||    
T  32371680 aaggcataactctgccttattttcaccttggaattgctgcaattcatgaataaataaatactgtttggaattgtatttatatcatggttaaaaagcttgc 32371779  T
Q  101 aagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctcgccaacataatcgttttctggacagatgcgagaaaagctcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||    
T  32371780 aagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctcacgaacatattcgttttctggacagatgcgagaaaaactcac 32371879  T
Q  201 gattatggagttcgaannnnnnnctaaaaaagcccaaatcgcagtaccgcctcacagtttattgaattctaagagttgtatcctaatatcttctctaatc 300  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32371880 gattatggagttcgaatttttttctaaaaaagcccaaatcgcagtaccgcctcacagtttattgaattctaagagttgtatcctaatatcttctctaatc 32371979  T
Q  301 tctagtct 308  Q
    ||||||||    
T  32371980 tctagtct 32371987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 32365147 - 32364989
Alignment:
Q  13 tgccttattttcaccttggaattgctgcaattcatgaatgaataaatact--gtttggaattgtatttatatcatggttggaaaactcgcaagtcagctt 110  Q
    |||| ||||||||||||||||||||   ||||||||||| ||||||||||  || |||||||||||||||||||||||| | |||||||||||||||||     
T  32365147 tgccctattttcaccttggaattgc---aattcatgaat-aataaatactctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctc 32365052  T
Q  111 gtagacttggccaagtttacgagcccagcaacccatacaagttggctcgccaacataatcgtt 173  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||    
T  32365051 gtagagttggccaagtttacgagtccagctacccatacaagttgactcgcgaacataatcgtt 32364989  T

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