View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_high_8 (Length: 253)
Name: NF3321_high_8
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 32357047 - 32357192
Alignment:
| Q |
60 |
aaaggaagtgttgtaacattgtgagattgtttaatattctcaatttattatgtcaaatagccttgagtgggtcagcttatttt-ttcctccaaaacatgt |
158 |
Q |
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| T |
32357047 |
aaaggaagtgttgtaacattgtgagatggttcaatattcacaatttatgatgtcaaataaccttgagtgg-tcaggttatttttttcctccaaaacatgt |
32357145 |
T |
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| Q |
159 |
ctagagactaagattgtgattatcaatcactagaagctggataatat |
205 |
Q |
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| T |
32357146 |
ctagaaactaagattgtgactatctatcactagaagctggataatat |
32357192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 32371429 - 32371536
Alignment:
| Q |
14 |
atatctaggtcagaaggcaacaaccttagtattatagtgaggctc------gaaaggaagtgttgtaacattgtgagattgtttaatattctcaatttat |
107 |
Q |
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| T |
32371429 |
atatctaggtcagaaggcaacaaccttagtattatactgaggctctccctcgaaaggaagtgttgtaacattgtgagattgtttaatattcacaatttat |
32371528 |
T |
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| Q |
108 |
tatgtcaa |
115 |
Q |
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| T |
32371529 |
tatgtcaa |
32371536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 32371530 - 32371594
Alignment:
| Q |
155 |
atgtctagagactaagattgtgattatcaatcactagaagctggataatatcgttcactagaagg |
219 |
Q |
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| T |
32371530 |
atgtcaagagactaagattgtgattatcgatcactagaagctggataatatcgatcactagaagg |
32371594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 32364939 - 32364860
Alignment:
| Q |
115 |
aatagccttgagtgggtcagcttattttttcctccaaaacatgtctagagactaagattgtgattatcaatcactagaagct |
196 |
Q |
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| T |
32364939 |
aataaccttgagtgggtcaggttattttttcctccaaaac--gtctagaaattaagattctaactatctatcactagaagct |
32364860 |
T |
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