View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_low_1 (Length: 686)
Name: NF3321_low_1
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 354 - 675
Target Start/End: Original strand, 41104219 - 41104538
Alignment:
| Q |
354 |
gctagtgtcaaacttgtcaacttaagacatgtatgtaatccaatccacttgcaacttggtactccactcttctttacttgctcatatcatatatcgccct |
453 |
Q |
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| T |
41104219 |
gctagtgtcaaacttgtcaacttaagacatgtatgtaatccaatccacttgcaacttggtactccactcttctttacttgctcatatcatat--cgccct |
41104316 |
T |
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| Q |
454 |
agtccttacattacaatgacattagcatgaccttttccaactatattttcattcaaacgcgttcatattcagacaaccataacatcacacgaaaccggcc |
553 |
Q |
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| T |
41104317 |
agtccttacattacaatgacattagcatgaccttttccaactctattttcattcaaacgcgttcatattcagacaaccataacatcacacgaaaccggcc |
41104416 |
T |
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| Q |
554 |
gtaggattaaaatgtttattttactcttttcgaataagccaaattttcccaacaaatgcatttttacattaaattattcttctcttcatcattgaccaga |
653 |
Q |
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| T |
41104417 |
gtaggattaaaatgtttattttactcttttggaataagccaaattttcccaacaaatgcatttttacattaaattattcttctcttcatcattgaccaga |
41104516 |
T |
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| Q |
654 |
tccttctttacatatatttcat |
675 |
Q |
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| T |
41104517 |
tccttctttacatatatttcat |
41104538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 41103830 - 41104099
Alignment:
| Q |
16 |
ataaaagaggttgtaatcaacttttaataagtatacgtaattaagtatcccacgaaatggaagagtggttgatttaaagtgtgaaaaatgagtaaagaaa |
115 |
Q |
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| T |
41103830 |
ataaaagagtttgtaatcaacttttaataagtatacgtaattaagtatcccacgaaatggaagagtggttgatttaaagtgtgaaaaatgagtacagaaa |
41103929 |
T |
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| Q |
116 |
tacacatcaatgatagtcactggtttgannnnnnnnnnnngaagatatgtcttgcctttatttgcccaattggaaggattaccttatgtaagaagatacg |
215 |
Q |
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| T |
41103930 |
tacacatcaatgatagtcactggtttgatttttcatttttgaagatatgtcttgcctttatttgcccaattggaaggattaccttatgtaagaagatacg |
41104029 |
T |
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| Q |
216 |
aacagattttaaaccatgaggaggaattctaattctaggtcgtttcttccattagattcaccgtatacaa |
285 |
Q |
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| T |
41104030 |
aacagattttaaaccatgaggaggaattctaattctaggtcgtttcttccattagattcaccgtatacaa |
41104099 |
T |
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