View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_low_12 (Length: 242)
Name: NF3321_low_12
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32894963 - 32894742
Alignment:
| Q |
1 |
caattttttaataaaaa-tattgtgtttttcgcatatgtttatgatgatttatgaatacttacattaaaaaatgtttgacatcacgaccaataataatta |
99 |
Q |
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| T |
32894963 |
caattttttaataaaaaatattgtgtttttcgcatatgtttatgatgatttatgaatacttacattaaaaaatgtttgacatcacgaccaataataatta |
32894864 |
T |
|
| Q |
100 |
gaacataccgagtcacacatatataggaaattcttgaagcaactgaaataattaattaaacaatacattcttttttaaatgtgtctcataataataaaga |
199 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32894863 |
gaacatgccgagtcacatatatataggaaattcttgaagcaactgaaataattaattaaacaatacattcttttttaaatgtgtctcataataataacga |
32894764 |
T |
|
| Q |
200 |
tgagtattttcatctaatgttg |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
32894763 |
tgagtattttcatctaatgttg |
32894742 |
T |
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