View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_low_2 (Length: 459)
Name: NF3321_low_2
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 46314864 - 46315306
Alignment:
| Q |
1 |
gagatgaaacaacctgctggtcgtcgtcttttgaaggaaagtgttgatggagaagaggatgttttaggtcatggtggtgattttgagcttcctgagtggg |
100 |
Q |
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| T |
46314864 |
gagatgaaacaacctgctggtcgtcgtcttttgaaggaaagtgttgatggagaagaggatgttttaggtcatggtggtgattttgagcttcctgagtggg |
46314963 |
T |
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| Q |
101 |
ttgatgaccgtgccggtgttaggaaacttcttaataaaatgactggaaggaaacttcaggctcatgttgttgttgctaaggatggaagtggaaatttcac |
200 |
Q |
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| T |
46314964 |
ttgatgaccgtgccggtgttaggaaacttcttaataaaatgactggaaggaaacttcaggctcatgttgttgttgctaaggatggaagtggaaatttcac |
46315063 |
T |
|
| Q |
201 |
cacaatcactgaggctcttaagcatgttcccaagaaaaacttgaagccatttgttatttacatcaaggagggtgtttataaagagtatgttgaagttact |
300 |
Q |
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| T |
46315064 |
cacaatcactgaggctcttaagcatgttcccaagaaaaacttgaagccatttgttatttacatcaaggagggtgtttataaagagtatgttgaagttact |
46315163 |
T |
|
| Q |
301 |
aaaaccatgactcacgttgttttcattggtgatggtggtagaaagacacgcattacgggcaataaaaacttcattgatggagtcggtaccttcaaaaccg |
400 |
Q |
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| T |
46315164 |
aaaaccatgactcacgttgttttcatcggtgatggtggtagaaagacacgcattacgggcaataaaaacttcattgatggagttggtaccttcaaaaccg |
46315263 |
T |
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| Q |
401 |
ctagcgttggtaggtgtctttcatgcttaagttatgtgtatgg |
443 |
Q |
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| T |
46315264 |
ctagcgttggtaggtgtttttcatgcttaaattatgtgtatgg |
46315306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 381
Target Start/End: Complemental strand, 37163071 - 37162940
Alignment:
| Q |
250 |
tttgttatttacatcaaggagggtgtttataaagagtatgttgaagttactaaaaccatgactcacgttgttttcattggtgatggtggtagaaagacac |
349 |
Q |
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||||||||| | |||||||||||||||||| | |||||||||||||||||||| | |||||||| ||||| || | ||||||||||| | |||||| |
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| T |
37163071 |
tttgttattcatatcaaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaa |
37162972 |
T |
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| Q |
350 |
gcattacgggcaataaaaacttcattgatgga |
381 |
Q |
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| T |
37162971 |
gaattactggcaacaaaaattttatagatgga |
37162940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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