View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_low_4 (Length: 440)
Name: NF3321_low_4
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 32895078 - 32895512
Alignment:
| Q |
1 |
tacagatgtaagggcattgataatattatcttcccttcatttttctttaaaataaccattctttgctattaccaacccgttagtagtgtgtacccaatag |
100 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
32895078 |
tacagatgtaaggacatggataatattatcttcccttcatttttctttaaaataaccattcttggctattaccaacccgtgagtagtgtgtacccaatag |
32895177 |
T |
|
| Q |
101 |
accacaagatgggggagaattttagggnnnnnnnnnnnnnna-----ggaaagaattttaggttgagctgcttctcttatttcacacttttgcctaaacc |
195 |
Q |
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| T |
32895178 |
accacaagatgggtgagaattttagggtttttttttttttttttttgggaaagaattttaggttgagtcgcttctcttatttcacacttttgcctaaacc |
32895277 |
T |
|
| Q |
196 |
ttaatattaaaattgtgattcattgattattgtaaatgaaattcaaaatattcttaagcagaaggcgcagagaaaactatatgttttcaatattttttcc |
295 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32895278 |
ttaatattaaaattgtgattcattggttattgtaaatgaaattcaaaatattcttaagcagaaggcgcagagaaaactatatgttttcaatattttttcc |
32895377 |
T |
|
| Q |
296 |
tgtgcaaaattttgttttcatcttggaaagttgaatgtgtaaggacaaaattaaaacctgtattttttaagagtaagattacaacagaatttagcaaaaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32895378 |
tgtgcaaaattttgttttcatcttggaaagttgaatgtgtaaggacaaaattaaaacctgtattttttaagagtaagattacaacagaatttagcaaaaa |
32895477 |
T |
|
| Q |
396 |
tccaaatctatccacctcattgccaatcttctctg |
430 |
Q |
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| T |
32895478 |
tccaaatctatccacctcattgccaatcttctctg |
32895512 |
T |
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