View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_low_5 (Length: 348)
Name: NF3321_low_5
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 30400663 - 30400996
Alignment:
| Q |
1 |
tttttagatggattatgttagcaattgataactaaaaagagttggtaattaatatttgattagtttagtgtaaataattttgctttgtgtctacctgaat |
100 |
Q |
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| T |
30400663 |
tttttagatggattatgttagcaattgataactaaaaagagttggtaattaatatttgattagtttagtgtaaataattttgctttgtgtctacctgaat |
30400762 |
T |
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| Q |
101 |
agtaaattctatgcttggataaccatgcatcacattattctgatccttgaggtgtcaacccagcggtaaaagtttgaacttgtaacttcaaaagagacgg |
200 |
Q |
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| T |
30400763 |
agtaaattctatgcttggataaccatgcatcacattattctgatccttgaggtgtcaacccagcggtaaaagtttgaacttgtaacttcaaaagagacgg |
30400862 |
T |
|
| Q |
201 |
agttcaaatccccttagagatagtagtaataaccattattgccatttggatatgaatgtcttttattaattgtaactcattctgtggtttgtgatcagaa |
300 |
Q |
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| T |
30400863 |
agttcaaatccccttagagatagtagtaataaccattattgccatttggatatgaatgtcttgtattaattgtaactcattctgtggtttgtgatcagaa |
30400962 |
T |
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| Q |
301 |
taaagtaaatggcaatgatgttacatatgctgat |
334 |
Q |
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| T |
30400963 |
taaagtaaatggcaatgatgttacatatgctgat |
30400996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 10786022 - 10785981
Alignment:
| Q |
286 |
ggtttgtgatcagaataaagtaaatggcaatgatgttacata |
327 |
Q |
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||||||||||||||||||||||||||| | |||||||||||| |
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| T |
10786022 |
ggtttgtgatcagaataaagtaaatggaagtgatgttacata |
10785981 |
T |
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