View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3321_low_9 (Length: 278)
Name: NF3321_low_9
Description: NF3321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3321_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 108 - 268
Target Start/End: Original strand, 17080860 - 17081020
Alignment:
| Q |
108 |
aatttaacaagcttttataacaaaagattcaatggatacggaatttgaattcaaaattaatcctttccctctcatatatatgaattacgcatccatccct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||| |
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| T |
17080860 |
aatttaacaagcttttataacaaaagattcaatggatacggaatttgaattcaaaattaatcttttccctttcatatatacaaattacgcatccacccct |
17080959 |
T |
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| Q |
208 |
tcctctataaattcagatctcttcttttggtatcttttatttgtcaactcaccatcctttg |
268 |
Q |
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|| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
17080960 |
tcttctataaattcagatctcttcttttggtatttttcatttgtcaactcaccatcctttg |
17081020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17080722 - 17080844
Alignment:
| Q |
1 |
ctcattgtttttgattaggacgaatttccccttctctgttgctttctatcaagtgacattttaaatgacatttaacaatgtgtcataattagtcgtgcaa |
100 |
Q |
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| T |
17080722 |
ctcattgcttttgattaggacgaatttccccttctctgttgctttctatcaagtgacattttaaatgacatttaacaatgtgtcataattagtcgtgcaa |
17080821 |
T |
|
| Q |
101 |
aaaatgaaatttaacaagctttt |
123 |
Q |
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| T |
17080822 |
aaaatgaaatttaacaagctttt |
17080844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 28788910 - 28789104
Alignment:
| Q |
3 |
cattgtttttgattaggacgaatttccccttctctgttgctttctatcaagtgacattttaaatgacatttaacaatgtgtcataattagtcgtgcaaaa |
102 |
Q |
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| T |
28788910 |
cattgcttttgattaggaaagatttgcccttccatgttgctttctattaagtgacatttaacaagacattt---aatgtaacataatcagtcgtaccata |
28789006 |
T |
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| Q |
103 |
aatgaaatttaacaagcttttataacaaaagattcaat-ggatacggaatttgaattcaaaattaatcctttccctctcatatatatgaattacgcatcc |
201 |
Q |
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| T |
28789007 |
gatgaaatttaacatacttttataactagagattcaatgggatatggaatacaaattcgaaattaat--atttcctcccatatatacaaattacgcatcc |
28789104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 267
Target Start/End: Original strand, 22818635 - 22818842
Alignment:
| Q |
61 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatgg-atacggaatttgaattc |
159 |
Q |
| |
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|||| ||||||||||||| ||| |||||||||||| | | |||| |||||||||| |||||||||| | ||| ||||||| ||| | ||| |||||| |
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| T |
22818635 |
ttaagtgacatttaacaacgtgccataattagtcgaaccataaataaaatttaacatacttttataactagagactcaatgggatatgaaatacgaattc |
22818734 |
T |
|
| Q |
160 |
aaaattaatcctttccctctcatatatatgaattacgcatccatcccttcctctataaattcagatctcttcttttggtatcttttatttgtcaactcac |
259 |
Q |
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|||||| || ||||||| ||||||| ||||| |||||||| | || ||||||||||||| |||| | |||||||||||| | |||||||||||||| |
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| T |
22818735 |
gaaattattcttttcccttcgatatatacaaattatgcatccattcgttactctataaattcaaatctttgcttttggtatctctcatttgtcaactcac |
22818834 |
T |
|
| Q |
260 |
catccttt |
267 |
Q |
| |
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| |||||| |
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| T |
22818835 |
cgtccttt |
22818842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 268
Target Start/End: Original strand, 5494714 - 5494922
Alignment:
| Q |
61 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatgg-atacggaatttgaattc |
159 |
Q |
| |
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|||| |||||||||| || ||||||||| |||| || | |||||||||||| | |||||||||| || |||||||| | ||||| ||||||||||| |
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| T |
5494714 |
ttaagtgacatttaataacgtgtcataactagttttgacataaatgaaatttattaggcttttataaaaagagattcaacgacatacgaaatttgaattc |
5494813 |
T |
|
| Q |
160 |
aaaattaatcctttccctctcatatatatgaattacgcatccatcccttcctctataaattcagatctcttcttttggtatcttttatttgtcaactcac |
259 |
Q |
| |
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|||||||| |||||||| || ||||| |||||| ||| || || ||| |||||||||| |||||||| ||||||| |||| | |||| ||||||||| |
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| T |
5494814 |
aaaattaacattttccctcccaaatatacaaattacacattcacccattcttctataaatttagatctctacttttggaatctctcatttatcaactcac |
5494913 |
T |
|
| Q |
260 |
catcctttg |
268 |
Q |
| |
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||||||| |
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| T |
5494914 |
tctcctttg |
5494922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 256
Target Start/End: Original strand, 5508026 - 5508222
Alignment:
| Q |
61 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatg-gatacggaatttgaattc |
159 |
Q |
| |
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|||| |||||||||||||||||||||||||||| || | |||| ||||||| | | ||||||||||| ||||||| || ||| | ||||||||||| |
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| T |
5508026 |
ttaagtgacatttaacaatgtgtcataattagttttgacataaataaaatttattaggattttataacaagagattcattgagatgtgaaatttgaattc |
5508125 |
T |
|
| Q |
160 |
aaaattaatcctttccctctcatatatatgaattacgcatccatcccttcctctataaattcagatctcttcttttggtatcttttatttgtcaact |
256 |
Q |
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|||||||| || ||||| || ||||| ||||| ||||||||||||| | |||||||||| |||| | ||||||| |||||| || |||||||| |
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| T |
5508126 |
aaaattaacatttcccctcccaaatatacaaattatacatccatcccttcttatataaattcatatctatgcttttggaatctttcatctgtcaact |
5508222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 22803348 - 22803532
Alignment:
| Q |
84 |
cataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatg-gatacggaatttgaattcaaaattaatcctttccctctcat |
182 |
Q |
| |
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||||||||||||| | | ||||||||||||||| |||||||||| |||||||||||| |||| ||| ||||| ||||||||| |||||||| || |
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| T |
22803348 |
cataattagtcgtaccataaatgaaatttaacagacttttataactaaagattcaatgagata-tgaaaacgaatttgaaattaatcttttccctcccaa |
22803446 |
T |
|
| Q |
183 |
atatatgaattacgcatccatcccttcctctataaattcagatctcttcttttggtatcttttatttgtcaactcaccatcctttg |
268 |
Q |
| |
|
||||| ||||||||| || || ||||| ||||||| || || | | |||||||||||| | ||||||||| ||||| ||||||| |
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| T |
22803447 |
atatacaaattacgcacccgtcagttcctgtataaatacaaatttttgcttttggtatctctcatttgtcaattcaccgtcctttg |
22803532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 26450678 - 26450485
Alignment:
| Q |
61 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaat-ggatacggaatttgaattc |
159 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||| | |||||||| |||| | ||||||||||||| ||||||||| ||||| | |||| ||||| |
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| T |
26450678 |
ttaagtgacatttaac---gtgtcataattagttgtgtcataaatgaaaattaaaaggcttttataacaatagattcaatgggatatgaaattcgaattt |
26450582 |
T |
|
| Q |
160 |
aaaattaa--tcctttccctctcatatatatgaattacgcatccatcccttcctctataaattcagatctcttcttttggtatcttttatttgtcaa |
254 |
Q |
| |
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|||||||| | ||||| || | ||||| |||||||||||||| | |||| |||||||||| |||| ||| ||||| ||||| | ||||||||| |
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| T |
26450581 |
aaaattaattttttttccttcctaaatatacgaattacgcatccacctcttcttctataaattgagatatctgtttttgttatctatcatttgtcaa |
26450485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 25128815 - 25128744
Alignment:
| Q |
171 |
tttccctctcatatatatgaattacgcatccatcccttcctctataaattcagatctcttcttttggtatct |
242 |
Q |
| |
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|||||||| || | ||||||||||||||| | | ||||||||||||||||||||||| ||||| |||||| |
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| T |
25128815 |
tttccctcccaaaaatatgaattacgcataagttcattcctctataaattcagatctctacttttcgtatct |
25128744 |
T |
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