View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3322_high_2 (Length: 343)
Name: NF3322_high_2
Description: NF3322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3322_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 560828 - 561155
Alignment:
| Q |
1 |
cactcctgtaaccaataattcatgtgttcaagatcctcatgaggatcctaattgcagcaacgacgatgatgtctgcgatgaggtaattgattcgtttaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
560828 |
cactcctgtaaccaataattcatgtgttcaagatcctcatgaggttcctaattgcagcaacgacgatgatgtctgcgatgaggtaattgattcgtttaca |
560927 |
T |
|
| Q |
101 |
aggattctcgcccttactaatgtaagcaagcatgcattctacatacctcggttttgtgctgaaaatatgttcccgccgcttggcatggaggtttctcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
560928 |
aggattctcgcccttactaatgtaagcaagcatgcattctacatacctcggttttgtgctgaaaatatgttcccgccgcttggcatggaggtttctcaac |
561027 |
T |
|
| Q |
201 |
acctcctcgtcactgacgttcatggtgaagtttggaagtttcaccatgtctgccacggctttgccaagagaaacgtcttttatacctctgaatgggcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
561028 |
acctcctcgtcactgacgttcatggtgaagtttggaagtttcaccatgtctgccacggctttgccaagagaaacgtcttttatacctctgaatgggcttc |
561127 |
T |
|
| Q |
301 |
gtttgttgagaggaagaaactcgacgtc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
561128 |
gtttgttgagaggaagaaactcgacgtc |
561155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 323
Target Start/End: Complemental strand, 515315 - 515186
Alignment:
| Q |
194 |
tctcaacacctcctcgtcactgacgttcatggtgaagtttggaagtttcaccatgtctgccacggctttgccaagagaaacgtcttttatacctctgaat |
293 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||| |||||| |||||||||||| ||| ||| ||||||||||| | || |||| |||||||| |
|
|
| T |
515315 |
tctcaacacctgttcgttaccgacgttcatggtgaagtttcaaagttttaccatgtctgccgcgggtttcccaagagaaacatgttatatatctctgaat |
515216 |
T |
|
| Q |
294 |
gggcttcgtttgttgagaggaagaaactcg |
323 |
Q |
| |
|
|| |||||||||| ||||||||||||||| |
|
|
| T |
515215 |
ggaattcgtttgttaagaggaagaaactcg |
515186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 20229518 - 20229679
Alignment:
| Q |
69 |
atgtctgcgatgaggtaattgattcgtttacaaggattctcgcccttactaatgtaagcaagcatgcattctacatacctcggttttgtgctgaaaatat |
168 |
Q |
| |
|
||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||| | | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
20229518 |
atgtccgcgatgaggtaattggtttgtttacaaggattctcgcccctactaatgtaagcaaccgtacattctacatacctcggtcttgtgctgaaaatat |
20229617 |
T |
|
| Q |
169 |
gttcccgccgcttggcatggaggtttctcaacacctcctcgtcactgacgttcatggtgaag |
230 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| || || |||||||||||||||||| |
|
|
| T |
20229618 |
cttcccgccccttggcatggaggcttctcaacacctgttcatcgctgacgttcatggtgaag |
20229679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University