View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3322_high_4 (Length: 322)
Name: NF3322_high_4
Description: NF3322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3322_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 72 - 315
Target Start/End: Original strand, 19159073 - 19159316
Alignment:
| Q |
72 |
acctgtgtaccttcctttatttcatgtgatcagcctcaatggtatccacagggtgcacattctctttcccgtaggaacgataattggaacgcgtatgatt |
171 |
Q |
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| T |
19159073 |
acctgtgtaccttcctttatttcacgtgatcaacctcaatggtatccacatggtgcatattctctttcccgtaggaacgataattggaacgcgtatgatt |
19159172 |
T |
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| Q |
172 |
atgcacctgataaccaccatcgcgtaggaccatggtatctctcgatcagactgcccttgcatagggaaattcatcgaaactgtgctgatcaaagaagttg |
271 |
Q |
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| T |
19159173 |
ttgcacctgataaccaccatcgcgcaagaccatggtatctctcgatcgtcctgcccttgcatagggaaattcatcgaaattgtgctgatcaaagaagtta |
19159272 |
T |
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| Q |
272 |
ttcttatcggaataatattgctgccaatctggacgtctgtggtg |
315 |
Q |
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| T |
19159273 |
tccttatcggaataatactgctgccaatctggatgtttgtggtg |
19159316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2816369 - 2816311
Alignment:
| Q |
1 |
atatacacttttcttcgctttctctttgttggtcattgttttggatctagcaacatcag |
59 |
Q |
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| T |
2816369 |
atatacacttttctttgctttctctttgtcggtcattgttttggatctagcaacatcag |
2816311 |
T |
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