View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3323_high_5 (Length: 243)
Name: NF3323_high_5
Description: NF3323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3323_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 17770993 - 17770828
Alignment:
| Q |
63 |
ctgtcagccgaaatcaaaaggttacaagctcaaaaagacaccatttatcattaattgtttcaactttctgttttaccacatcctttctttctgttatata |
162 |
Q |
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| T |
17770993 |
ctgtcagccgaaatcaaaaggttacaagctcaaaaagacaccatttatcattatttgtttcaactttctattttaccacatcctttctttcttttatata |
17770894 |
T |
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| Q |
163 |
aatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttatt |
228 |
Q |
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| T |
17770893 |
aatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttatt |
17770828 |
T |
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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 41066821 - 41066752
Alignment:
| Q |
110 |
tcattaattgtttcaactttctgttttaccacatcctttctttctgttatataaatcacttttcctcact |
179 |
Q |
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| T |
41066821 |
tcattaattgtcccaactttctgttttacaacatcctttctttcttttatataaatcacttttcctcact |
41066752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 41066729 - 41066689
Alignment:
| Q |
185 |
ctctcttaaatctcttcaccctctatcacaaccaatctctt |
225 |
Q |
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| T |
41066729 |
ctctcttaaatctcttcaccctctatcacagccaatctctt |
41066689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 5391726 - 5391798
Alignment:
| Q |
145 |
ctttctttctgttatataaatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctctt |
225 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5391726 |
ctttctttcttttatataaatcacttttcct--------tctctcttaaatcaattcaccctctatcacaaccaatctctt |
5391798 |
T |
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