View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3323_low_1 (Length: 534)
Name: NF3323_low_1
Description: NF3323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3323_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 22 - 528
Target Start/End: Complemental strand, 47626251 - 47625745
Alignment:
| Q |
22 |
tgactccaatgcaacatcaattgcacttgatcgcgattcttcatattnnnnnnnnngttcatgaccatgataaggttgtggcatcaatatttttgaagtc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47626251 |
tgactccaatgcaacatcaattgcacttgatcgcgattcttcgtattaaaaaaaaagttcatgaccatgataaggttgtggcatcaagatttttgaagtc |
47626152 |
T |
|
| Q |
122 |
tccacaacctgcttgagccccattaattgcaattcttcctaataacaaaaactgcaatgcatttgcaaccattattgcaacttataaccttggtaaaatt |
221 |
Q |
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| T |
47626151 |
tccacaacctgcttgagccccattaattgcaattcttcctaataacaaaaagtgcaatgcatttgcaaccattattgcaacttataaccttggtaaaatt |
47626052 |
T |
|
| Q |
222 |
gatagcatgactaaattagattactataatagccgatttgataggtatcgcaattccacgtgaaaaaagtttggatgttcgatccgaggattaatcttat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47626051 |
gatagcatgactaaattagattactataatagccgatttgataggtatcgcaattccacgagaaaaaagtttggatgttcgatccgaggattaatcttat |
47625952 |
T |
|
| Q |
322 |
ggcaggctcaaagagtctaagccataaagatattttggcgcgcttactagggtcaaagatgctaattatggattaatagaaacatcatataaataaacta |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47625951 |
ggcaggctcaaagagtctaagccataaagatattttggcgcgcttactagggtcaaagatgctaattatggattaatagaatcatcatataaataaacta |
47625852 |
T |
|
| Q |
422 |
acccttagttgttgctgctgctgctgaggtctctgaatgctgataaaacggataagtttcaaacctaacaaaacaacttggaaagaaaacagtttcccct |
521 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625851 |
acccttagttgttgttgctgctgctgaggtctctgaatgctgataaaacggataagtttcaaacctaacaaaacaacttggaaagaaaacagtttcccct |
47625752 |
T |
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| Q |
522 |
atgctac |
528 |
Q |
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||||||| |
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| T |
47625751 |
atgctac |
47625745 |
T |
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