View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3323_low_2 (Length: 418)
Name: NF3323_low_2
Description: NF3323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3323_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 80 - 376
Target Start/End: Original strand, 3124699 - 3124994
Alignment:
| Q |
80 |
tacatataattataattttatttcataaaaatttcaacacttaaaaactaaactctggtttaaaattttcacacttgaaattaagtttaaacacttttag |
179 |
Q |
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| T |
3124699 |
tacatataattataattttatttcataaaaatttcaacacttaaa--ctaaactctggtttaaaattttaacacttgaaattaagtttaaacacttttag |
3124796 |
T |
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| Q |
180 |
atcaacgcaaaatttaaactgcattaacaaaaataaaatacatcaattgtttttgaagagttgagtttgcgggtttataatcataattcttttacccaaa |
279 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3124797 |
atcaacacaaaatttaaactgcattaacaaaaataaaatacatcaattgtttttgaagagttgagtttgcgggtttagaatcataattcttttacccaaa |
3124896 |
T |
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| Q |
280 |
tcaagtcatttcaagtttgaccggattggacataaactt-aaacatattcggataaaatatagttcagttggtttcggtcattgaattaaacaatagc |
376 |
Q |
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| T |
3124897 |
tcaagtcatttcaagtttgaccggattggacataaacttaaaacatattcggataaaatataggttagttggtttcggtcattgaattaaacaatagc |
3124994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3124620 - 3124668
Alignment:
| Q |
1 |
aactccgggccactgccgatgatgaacattttggttcggtcgggtcaac |
49 |
Q |
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| T |
3124620 |
aactccgggccactgccgatgatgaacattttggttcggtcgggtcaac |
3124668 |
T |
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