View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3323_low_4 (Length: 311)
Name: NF3323_low_4
Description: NF3323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3323_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 13879767 - 13880057
Alignment:
| Q |
1 |
gcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacag |
100 |
Q |
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| T |
13879767 |
gcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacag |
13879866 |
T |
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| Q |
101 |
ttgacagagtgagattttcttgggattgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaatggcttaagaatgttctagaaggatac |
200 |
Q |
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| T |
13879867 |
ttgacag--tgagattttcttgggattgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaatggctttagaatgttctagaaggatac |
13879964 |
T |
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| Q |
201 |
taacttggctatcaagagactttgcttagtgacgtgtcactttttcattgaatcactctcaccatataacttagttcattcatcatttttaat |
293 |
Q |
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| T |
13879965 |
taacttggctatcaagagactttgcttagtgacgtgtcactttttcattgaattactctcaccatataacttagttcattcatcatttttaat |
13880057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 13875544 - 13875805
Alignment:
| Q |
1 |
gcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga--- |
97 |
Q |
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| T |
13875544 |
gcagtagcgacggggtggcggcgaatgagtgaaggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttgaaga |
13875643 |
T |
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| Q |
98 |
-----cagttgacagagt--gagattttcttgggattgctttctctctttatcgcttgcttttagggtttttgtagtga----------aaaatggctta |
180 |
Q |
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| T |
13875644 |
aacttgacttcacagatttagagatttttttgggattgctttctttcttt----cttaattttagggtttttgtagtgagtgagttagtgaaatggctta |
13875739 |
T |
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| Q |
181 |
agaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtcactttttc |
246 |
Q |
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| T |
13875740 |
agaatgttctagaaggatactaacttggttaccaagccactttgttttgtgacgtgtcacgttttc |
13875805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 13885860 - 13885918
Alignment:
| Q |
180 |
aagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtc |
238 |
Q |
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| T |
13885860 |
aagaaggttctagaaggatactaccttggctaccaagccactttgcttagtgacgtgtc |
13885918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 13870759 - 13870812
Alignment:
| Q |
180 |
aagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgac |
233 |
Q |
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| T |
13870759 |
aagaaggttctagaatgatactaacttggctaccaagccactttgcttactgac |
13870812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
61 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
97 |
Q |
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| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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