View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3323_low_5 (Length: 279)

Name: NF3323_low_5
Description: NF3323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3323_low_5
NF3323_low_5
[»] chr8 (12 HSPs)
chr8 (10-264)||(6425434-6425688)
chr8 (17-192)||(7460971-7461146)
chr8 (16-192)||(6353961-6354137)
chr8 (15-192)||(6364716-6364896)
chr8 (15-192)||(6290726-6290903)
chr8 (18-146)||(6276024-6276152)
chr8 (18-147)||(6333448-6333577)
chr8 (15-144)||(6323001-6323130)
chr8 (16-192)||(6392437-6392613)
chr8 (16-192)||(6411577-6411753)
chr8 (21-147)||(6265522-6265648)
chr8 (67-147)||(6371578-6371658)
[»] chr2 (2 HSPs)
chr2 (15-152)||(42694733-42694870)
chr2 (87-145)||(42686801-42686859)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 6425688 - 6425434
Alignment:
Q  10 gcagagacatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatgg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6425688 gcagtgacatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatgg 6425589  T
Q  110 aaccatcaactttgtttgcgactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaaacaaaaactcatattta 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6425588 aaccatcaactttgtttgcaactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaaagaaaaactcatattta 6425489  T
Q  210 tttgtctagttaagtataaattatttctcaaaacttgacatgattaagtaaatat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6425488 tttgtctagttaagtataaattatttctcaaaacttgacatgattaagtaaatat 6425434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 7461146 - 7460971
Alignment:
Q  17 catgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatc 116  Q
    |||||||||||||||||| || |||||||| || | | |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7461146 catgggaattccaggagctttttatattgataactatatgcaaggtgaattcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatc 7461047  T
Q  117 aactttgtttgcgactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaa 192  Q
    |||||||||||| |||| ||| || |||||   ||||| |||||||  ||||||||||| || || ||||||||||    
T  7461046 aactttgtttgcaactcatggattcacaattctaaaaagtacaaaacggaccgcatcttctttgccaacaaggtaa 7460971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 6354137 - 6353961
Alignment:
Q  16 acatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccat 115  Q
    ||||||||||||| ||||| || || || || |||||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6354137 acatgggaattcccggagctttttacatcgataattttatgcaaggtgaattcttccttgtgagtttgacacttgaagatgttccaaaccatggatccat 6354038  T
Q  116 caactttgtttgcgactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaa 192  Q
    | ||||||| ||| |||| ||| ||||||||   ||||| |||||||  ||||||||||| || || ||||||||||    
T  6354037 ccactttgtctgcaactcatggatttacaattctaaaaagtacaaaaccgaccgcatcttctttgccaacaaggtaa 6353961  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 6364896 - 6364716
Alignment:
Q  15 gacatgggaattccaggagcattctatattgagaattttttgcaacatg---agttcttccttgtgagtttgacacttgaagatgttccaaaccatggaa 111  Q
    |||||||||| ||||||||| || ||||||||||||| | |||||  ||   | ||||||||||| || ||||| |||||||||||||||||||||||||    
T  6364896 gacatgggaactccaggagctttttatattgagaattatctgcaaggtggtgaattcttccttgtcagcttgactcttgaagatgttccaaaccatggaa 6364797  T
Q  112 ccatcaactttgtttgcgactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaa 192  Q
    ||||||||||||||||| |||| ||||||||||| |  ||||| ||||||| | | ||||| || || || ||||||||||    
T  6364796 ccatcaactttgtttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 6364716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 6290903 - 6290726
Alignment:
Q  15 gacatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaacca 114  Q
    ||||||||||||||||||||||| |||||| |||||     ||||   || ||||| ||||| |||||||| |||||||||||||| |||||||||||||    
T  6290903 gacatgggaattccaggagcattttatattaagaatcgcaagcaaagagaattctttcttgtaagtttgacccttgaagatgttcccaaccatggaacca 6290804  T
Q  115 tcaactttgtttgcgactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaa 192  Q
    |||||||||||||| |||| ||| |||||||||   |||| ||||||| ||| |||||||| || || ||||||||||    
T  6290803 tcaactttgtttgcaactcatggatttacaatgctcaaaactacaaaactgaacgcatcttctttgccaacaaggtaa 6290726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 6276152 - 6276024
Alignment:
Q  18 atgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatca 117  Q
    |||||||||||||||||||| ||||||||||||||  ||| |   || ||||| ||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  6276152 atgggaattccaggagcattttatattgagaatttcatgctaggagaattctttcttgtaagtttaacacttgaagatattcctaaccatggaaccatca 6276053  T
Q  118 actttgtttgcgactcttgggtttacaat 146  Q
    ||||||||||| |||| ||| ||||||||    
T  6276052 actttgtttgcaactcatggatttacaat 6276024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 6333577 - 6333448
Alignment:
Q  18 atgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatca 117  Q
    |||||||||||||||||||| |||||||| |||||  ||| |   || ||||||||||| |||||||| ||||||||| |||| | ||||||||||||||    
T  6333577 atgggaattccaggagcattttatattgaaaatttcatgctaggagaattcttccttgtaagtttgacgcttgaagatattcccatccatggaaccatca 6333478  T
Q  118 actttgtttgcgactcttgggtttacaatg 147  Q
    ||||||||||| |||| ||| |||||||||    
T  6333477 actttgtttgcaactcatggatttacaatg 6333448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 6323130 - 6323001
Alignment:
Q  15 gacatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaacca 114  Q
    ||||||||| ||||||||||||| |||||||||| |    ||  ||  || ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  6323130 gacatgggagttccaggagcattttatattgagagtaacatgacacgagaattcttccttgtaagtttgacacttgaagatattccaaaccatggaacca 6323031  T
Q  115 tcaactttgtttgcgactcttgggtttaca 144  Q
    |||||||||| ||| |||| ||| ||||||    
T  6323030 tcaactttgtatgcaactcatggatttaca 6323001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 6392613 - 6392437
Alignment:
Q  16 acatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccat 115  Q
    ||||||||||||||||||| |||||| || ||||||||  |||| ||||  ||||||||||||||||||| ||||||||||||  || ||||| |||||     
T  6392613 acatgggaattccaggagctttctatgttaagaattttacgcaagatgaaatcttccttgtgagtttgacccttgaagatgttgaaagccatgaaaccac 6392514  T
Q  116 caactttgtttgcgactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaa 192  Q
     |||||| ||||| |||| ||| |||||||||   |||| ||| ||| ||| ||||| || || || ||||||||||    
T  6392513 aaactttatttgcaactcatggatttacaatgctgaaaagtaccaaactgaacgcattttctttgccaacaaggtaa 6392437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 6411753 - 6411577
Alignment:
Q  16 acatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccat 115  Q
    ||||||||||||||||||| |||||| || ||||||||  |||| ||||  ||||||||||||||||||| ||||||||||||  || ||||| |||||     
T  6411753 acatgggaattccaggagctttctatgttaagaattttacgcaagatgaaatcttccttgtgagtttgacccttgaagatgttgaaagccatgaaaccac 6411654  T
Q  116 caactttgtttgcgactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaa 192  Q
     |||||| ||||| |||| ||| |||||||||   |||| ||| ||| ||| ||||| || || || ||||||||||    
T  6411653 aaactttatttgcaactcatggatttacaatgctgaaaagtaccaaactgaacgcattttctttgccaacaaggtaa 6411577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 6265648 - 6265522
Alignment:
Q  21 ggaattccaggagcattctatattgagaattttttg-caacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaac 119  Q
    |||||||| ||||||||| | ||| |||| ||| || |||| ||||||| |||||||||||||||| ||||| ||| | ||||||  |||||||||  ||    
T  6265648 ggaattcctggagcattcaaaattaagaactttatgtcaac-tgagttcctccttgtgagtttgactcttgatgatatcccaaacgttggaaccattcac 6265550  T
Q  120 tttgtttgcgactcttgggtttacaatg 147  Q
    ||||||||| |||| |||||||||||||    
T  6265549 tttgtttgcaactcgtgggtttacaatg 6265522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 6371658 - 6371578
Alignment:
Q  67 tcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaactttgtttgcgactcttgggtttacaatg 147  Q
    ||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||   ||| |||| ||| |||||||||    
T  6371658 tcttccttgtgagtttgacccttaatgatgttccaaatcatggaaccatcaactttaactgcaactcatggatttacaatg 6371578  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 42694870 - 42694733
Alignment:
Q  15 gacatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaacca 114  Q
    |||||||||||||| |||||||| || ||  |||| ||| |||||  |||||| ||||||||||||||||| ||||||||  ||||||| ||||||| ||    
T  42694870 gacatgggaattcctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagca 42694771  T
Q  115 tcaactttgtttgcgactcttgggtttacaatgacaaa 152  Q
    || ||||||| ||| |||| ||| |||| |||| ||||    
T  42694770 tctactttgtatgcaactcctggatttataatgccaaa 42694733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 42686801 - 42686859
Alignment:
Q  87 cttgaagatgttccaaaccatggaaccatcaactttgtttgcgactcttgggtttacaa 145  Q
    |||||||||||||||||||||||||||||    ||||| ||| ||||||||||||||||    
T  42686801 cttgaagatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaa 42686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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