View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3323_low_7 (Length: 226)
Name: NF3323_low_7
Description: NF3323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3323_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 29007792 - 29008000
Alignment:
| Q |
1 |
cttattttgagttttttctctgcttttcccaccattatcacatcatgttttatatcaatatctttctcatttcgttattttcgtaacctagactctgaga |
100 |
Q |
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| T |
29007792 |
cttattttgagttttttctctgtttttcccaccattatcacatcatgttttatatcaatatatttctcatttcgttatttttgtaacctagactctgaga |
29007891 |
T |
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| Q |
101 |
acgaaaactatcatgtaatgcataagagataatagatggaccgacttccttggattcacgagtcccacattcacacatttgaaaaccagtgaccttatgg |
200 |
Q |
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| T |
29007892 |
acgaaaactatcatgtaatgcataagagataatagatggaccaacttccttggattcacgagtcccacattcacacatttgaaaaccagtgaccttatgg |
29007991 |
T |
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| Q |
201 |
tttatattg |
209 |
Q |
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||||||||| |
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| T |
29007992 |
tttatattg |
29008000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 21461702 - 21461529
Alignment:
| Q |
24 |
ttttcccaccattatcacatcatgttttatatc---aatatctttctcatttcgttattttcgtaacctagactctgagaacgaaaactatcatgtaatg |
120 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||| |
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| T |
21461702 |
tttttccaccattatcacatcatgttttatatcgtcaatatctttctcatttcgttattttcataacctagactccaagaacgaaaactaccacgtaatg |
21461603 |
T |
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| Q |
121 |
cataagaga-taatagatggaccgacttccttggattcacgagtcccacattcacacatttgaaaaccagtgac |
193 |
Q |
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| T |
21461602 |
catgaaagaataatagatggaccaacgtccttgcattcacgagtcctacattcacacatttgaaaaccagtgac |
21461529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 21409414 - 21409228
Alignment:
| Q |
12 |
ttttttctctgcttttc-ccaccattatcacatcatgttttata---tcaatatctttctcatttcgttattttcgtaacctagactctgagaacgaaaa |
107 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||| |
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| T |
21409414 |
ttttttctctgtttttttccaccattatcacatcatgttttataccgtcaatatctttctcatctcgttattttcataacctagactccaagaacgaaaa |
21409315 |
T |
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| Q |
108 |
ctatcatgtaatgcataagag-ataatagatggaccgacttccttggattcacgagtcccacattcacacatttgaaaaccagtgac |
193 |
Q |
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||| || ||||||||||| || ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||| |
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| T |
21409314 |
ctaccacgtaatgcataaaagaataatagatggaccgacgtccttgcattcacgagtcgtacattcacacatttgaaaacgagtgac |
21409228 |
T |
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