View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3323_low_8 (Length: 213)
Name: NF3323_low_8
Description: NF3323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3323_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 44145240 - 44145424
Alignment:
| Q |
15 |
cacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccgacaccaacattaattttcagcctctgtacaggtagagta |
114 |
Q |
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| T |
44145240 |
cacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtagagta |
44145339 |
T |
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| Q |
115 |
atggagtagccacatttggacagagtgtttccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatatt |
199 |
Q |
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| T |
44145340 |
atggagtagccacatttggacagagtgtttccagttttacaccctttcttgctagattaattcagtcaggactcgggaagatatt |
44145424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 44158164 - 44158099
Alignment:
| Q |
46 |
ccataaccagtacaacattcaaaacaaccgacaccaacattaattttcagcctctgtacaggtaga |
111 |
Q |
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| T |
44158164 |
ccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagcctatgtacaggtaga |
44158099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 44156610 - 44156559
Alignment:
| Q |
130 |
ttggacagagtgtttccagttttacaccctttcttgctagattaattcggtc |
181 |
Q |
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| T |
44156610 |
ttggacaaagtgtttccaattttacaacctttctttctagattaatttggtc |
44156559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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