View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3324_high_3 (Length: 324)

Name: NF3324_high_3
Description: NF3324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3324_high_3
NF3324_high_3
[»] chr7 (12 HSPs)
chr7 (14-308)||(46481316-46481610)
chr7 (17-307)||(46475674-46475969)
chr7 (27-196)||(46492689-46492858)
chr7 (78-200)||(46324285-46324407)
chr7 (131-224)||(46510005-46510101)
chr7 (78-208)||(46522574-46522704)
chr7 (78-208)||(46530007-46530137)
chr7 (78-200)||(46328717-46328839)
chr7 (78-200)||(46519240-46519362)
chr7 (78-178)||(46525685-46525785)
chr7 (25-118)||(46513666-46513755)
chr7 (87-176)||(46464054-46464143)
[»] chr4 (1 HSPs)
chr4 (72-202)||(89069-89199)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 46481610 - 46481316
Alignment:
Q  14 cataggtgatctggatttagtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481610 cataggtgatctggatttagtttacacttcttttggtaccaagcaatacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggtt 46481511  T
Q  114 atacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttatctcaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481510 atacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttatctcaatt 46481411  T
Q  214 ctcaagcaactattcgctagagttttgtttaatcgtcttctaataaataatttagcaacaatatatgcttttctattgcggaaatttgaagttat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481410 ctcaagcaactattcgctagagttttgtttaatcgtcttctaataaataatttagcaacaatatatgcttttctattgcggaaatttgaagttat 46481316  T

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Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 46475969 - 46475674
Alignment:
Q  17 aggtgatctggatttagtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttata 116  Q
    ||||||| |||||  ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  46475969 aggtgatttggatgcagtttacacttcttttggtaccaagcaatacatcgagagtggtggtttcaagaaagatgtgccaaatttggaggaagttgttata 46475870  T
Q  117 caaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttat---ctcaatt 213  Q
    ||  |||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| |||   |||||||    
T  46475869 caggaaggtgtggctcactttaacaaccaagaagctgctgaagatatcagcaatcacatttatgattttatcaagaaattctgatcgtatcaactcaatt 46475770  T
Q  214 ctcaagcaactattcgcta-gagttttgtttaatcgtcttc-taataaataatttagcaacaatatatgcttttctattgcggaaatttgaagtta 307  Q
    | ||||| ||||||| | | |||||  ||| |||||| ||| ||||||||||||||||  |||| |||| |||||| |||||| ||||||||||||    
T  46475769 cgcaagccactattcaccaggagttaagttaaatcgttttcttaataaataatttagctgcaatctatgtttttctcttgcggcaatttgaagtta 46475674  T

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Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 46492858 - 46492689
Alignment:
Q  27 gatttagtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtg 126  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||  ||||||    
T  46492858 gatttagtttacacttcttctggtaccaagcaatacatcgagagtggtggcttcaagaaagatgtgcccaatttggaggaagttgttatacaggaaggtg 46492759  T
Q  127 tggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagtt 196  Q
    |||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||    
T  46492758 tggctcacttcaacaaccaagaagctgctgaggatattagcaatcacatttatgattttatcaagaagtt 46492689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 46324285 - 46324407
Alignment:
Q  78 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 177  Q
    |||||| | |||||||| |||||||| |||||| || | |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||    
T  46324285 ttcaaggaagatgtgccgaatttggaagaagtgattgtccaaaaaggagtggctcacttcaacaatcaagaagcagcagaggaaatcagtaatcacattt 46324384  T
Q  178 atgattttatcaagaagttctga 200  Q
    |||| || |||||||||||||||    
T  46324385 atgaattcatcaagaagttctga 46324407  T

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Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 46510101 - 46510005
Alignment:
Q  131 tcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttat---ctcaattctcaagcaact 224  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||   ||||||||||||||||||    
T  46510101 tcactacaacaaccaagaagctgctgaggaagtcagtaatcacatttatgattttatcaagaagtattgatcttatcaactcaattctcaagcaact 46510005  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 46522704 - 46522574
Alignment:
Q  78 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 177  Q
    |||||| | ||||| || ||| |||| |||||| |||| |||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||||||    
T  46522704 ttcaaggaagatgttcccaatctggaagaagtgattatccaaaaaggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacattt 46522605  T
Q  178 atgattttatcaagaagttctgatcttatct 208  Q
    |||| || ||||||||||||||| |||||||    
T  46522604 atgaattcatcaagaagttctgagcttatct 46522574  T

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Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 46530137 - 46530007
Alignment:
Q  78 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 177  Q
    |||||| | ||||| || ||| |||| |||||| |||| |||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||||||    
T  46530137 ttcaaggaagatgttcccaatctggaagaagtgattatccaaaaaggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacattt 46530038  T
Q  178 atgattttatcaagaagttctgatcttatct 208  Q
    |||| || ||||||||||||||| |||||||    
T  46530037 atgaattcatcaagaagttctgagcttatct 46530007  T

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Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 46328717 - 46328839
Alignment:
Q  78 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 177  Q
    |||||| | |||||||| |||||||| |||||| |||| |||||||| || |||||||||||||| ||||||||||  ||||||||||||||| ||||||    
T  46328717 ttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt 46328816  T
Q  178 atgattttatcaagaagttctga 200  Q
    | || || |||| ||||||||||    
T  46328817 acgaattcatcatgaagttctga 46328839  T

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Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 46519362 - 46519240
Alignment:
Q  78 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 177  Q
    |||||| | |||||||| ||||||||||||||| || | |||||||| || ||||| |||||||| ||||||||||| |||||||| |||||||||||||    
T  46519362 ttcaaggaagatgtgccgaatttggaggaagtgattgtgcaaaaaggagtagctcatttcaacaatcaagaagctgcagaggaaattagtaatcacattt 46519263  T
Q  178 atgattttatcaagaagttctga 200  Q
    | || || |||||||| ||||||    
T  46519262 acgaattcatcaagaaattctga 46519240  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 46525785 - 46525685
Alignment:
Q  78 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 177  Q
    |||||| | |||||||  ||||||||||||||| || | |||||||| || |||||||||||||| ||||||||||  ||||||||||||||| ||||||    
T  46525785 ttcaaggaagatgtgctgaatttggaggaagtgattgttcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt 46525686  T
Q  178 a 178  Q
    |    
T  46525685 a 46525685  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 46513755 - 46513666
Alignment:
Q  25 tggatttagtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttataca 118  Q
    ||||| ||||||||  |||||||||| | ||||| ||||| || || |||||||||||||    ||||||||||||||||||||||||||||||    
T  46513755 tggatatagtttacgtttcttttggtgcgaagcaatacattgaaagtggtggtttcaaga----tgtgccaaatttggaggaagtggttataca 46513666  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 46464143 - 46464054
Alignment:
Q  87 gatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatt 176  Q
    ||||| || ||||| ||||||||| || |||||||||| |||| |||||| || || |||||||| || || ||||||||||| ||||||    
T  46464143 gatgtaccgaatttagaggaagtgattgtacaaaaaggagtgggtcactttaataatcaagaagcagcagaagaaatcagtaaacacatt 46464054  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 89069 - 89199
Alignment:
Q  72 ggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatc 171  Q
    |||||||||||||| ||||| |||  |||||||||||||||| | ||  ||||  | || |||||||||||||||||||| ||  | || ||||| ||||    
T  89069 ggtggtttcaagaaagatgttccaggtttggaggaagtggttgtgcaggaagggatagcacacttcaacaaccaagaagcagcacaagacatcagcaatc 89168  T
Q  172 acatttatgattttatcaagaagttctgatc 202  Q
    |||||||||| |||||  |||||||||||||    
T  89169 acatttatgactttattcagaagttctgatc 89199  T

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