View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3324_high_8 (Length: 241)
Name: NF3324_high_8
Description: NF3324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3324_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 48597377 - 48597164
Alignment:
| Q |
1 |
agtgaatcgtataacaaaaatatacactttggcaccaagtaaagaaatgataactcttatttacctatcaataaagtgagtagagttatac--gtaattt |
98 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
48597377 |
agtgaattgtataacaaaaatatacactttggcaccaagtaaagaaatgacatctctta---------caataaagtgagtagagttatacacgtgattt |
48597287 |
T |
|
| Q |
99 |
gacaccaatcaaaattatttatttattttctactatttatgttatagatatgacatacatggtaaaagataaataaataactttgattacattggtaagt |
198 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |
|
|
| T |
48597286 |
gacaccaatcaaatttatttatttattttctactatttatgttatagatatgacatacaagataaaagataaataaataattttgattacattg------ |
48597193 |
T |
|
| Q |
199 |
ggtaacactaccaaccttttgttgcaattg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48597192 |
-gtaacactaccaaccttttgttgcaattg |
48597164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 48591806 - 48591668
Alignment:
| Q |
1 |
agtgaatcgtataacaaaaatatacactttggcaccaagtaaagaaatgataactcttatttacctatcaataaagtgagtagagttat--acgtaattt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
48591806 |
agtgaatcgtataacaaaaatatacactttggcaccaagtaaagaaatgacaactcttatttacctatcaataaagtgagtagagttatacacgtgattt |
48591707 |
T |
|
| Q |
99 |
gacaccaatcaaaattatttatttattttctactattta |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48591706 |
gacaccaatcaaaattatttatttattttctactattta |
48591668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 48601501 - 48601363
Alignment:
| Q |
1 |
agtgaatcgtataacaaaaatatacactttggcaccaagtaaagaaatgataactcttatttacctatcaataaagtgagtagagttat--acgtaattt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
48601501 |
agtgaatcgtataacaaaaatatacactttggcaccaagtaaagaaatgacaactcttatttacctatcaataaagtgagtagagttatacacgtgattt |
48601402 |
T |
|
| Q |
99 |
gacaccaatcaaaattatttatttattttctactattta |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601401 |
gacaccaatcaaaattatttatttattttctactattta |
48601363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 26532768 - 26532813
Alignment:
| Q |
97 |
ttgacaccaatcaaaattatttatttattttctactatttatgtta |
142 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
26532768 |
ttgacaccaatcaaaattatttatttgtcttctactacttatgtta |
26532813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 15882735 - 15882690
Alignment:
| Q |
97 |
ttgacaccaatcaaaattatttatttattttctactatttatgtta |
142 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
15882735 |
ttgacaccaatcaaaatcatttatttgtcttctattatttatgtta |
15882690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 49197488 - 49197444
Alignment:
| Q |
100 |
acaccaatcaaaattatttatttattttctactatttatgttata |
144 |
Q |
| |
|
|||||||||||||| || ||||||| ||| ||||||||||||||| |
|
|
| T |
49197488 |
acaccaatcaaaatcatatatttatcttccactatttatgttata |
49197444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University