View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3324_high_9 (Length: 233)
Name: NF3324_high_9
Description: NF3324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3324_high_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 44222651 - 44222425
Alignment:
| Q |
7 |
gccataaccgtcctaaatgtggcggagaagccgtcggtggcgaaatcggtggcgagcatactctctcgcaaccaaggccttcgagtaagggacggtcgtt |
106 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44222651 |
gccataaccgtcctaaacgtggcagagaagccgtcggtggcgaaatcggtggcgagcatactctctcgcaaccaaggccttcgagtaagggacggtcgtt |
44222552 |
T |
|
| Q |
107 |
ctcgctacaacagaatcttcgaattcaactacaccattcgaggtcaaccctgtcaaatgctcttcacctccgtcctcggtcacctcatggagcttgactt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44222551 |
ctcgctacaacagaatcttcgaattcaactacaccattcgaggtcaaccctgtcaaatgctcttcacctccgtcctcggtcacctcatggagcttgactt |
44222452 |
T |
|
| Q |
207 |
cgacgatcgttaccggaaatggcactc |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44222451 |
cgacgatcgttaccggaaatggcactc |
44222425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University