View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3324_low_2 (Length: 335)
Name: NF3324_low_2
Description: NF3324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3324_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 55861129 - 55861448
Alignment:
| Q |
18 |
ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga |
117 |
Q |
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| T |
55861129 |
ccaccaacaacaaaacaaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatataaccccaccacaaagaaattatggacccga |
55861228 |
T |
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| Q |
118 |
attgaagtaccgccggaaa-ttgttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcga |
216 |
Q |
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| T |
55861229 |
attgaaggacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcga |
55861328 |
T |
|
| Q |
217 |
gaaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaac-aaccatggaagagttggatc |
315 |
Q |
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| T |
55861329 |
aaaagtcatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatc |
55861428 |
T |
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| Q |
316 |
tagcgcaaataacccctcct |
335 |
Q |
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| T |
55861429 |
tagcgcaaacaacccctcct |
55861448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 3821024 - 3820888
Alignment:
| Q |
1 |
atcacgacaatcaggcaccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacag |
100 |
Q |
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| T |
3821024 |
atcaccacaatcagacaccaccagcaacaaaataaaactgcaatcaacaaaagaagacaaaatccatataaaatgaaaggtaaaaccaaccccaccacag |
3820925 |
T |
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| Q |
101 |
agaaattatggacccgaattgaagtaccgccggaaat |
137 |
Q |
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| T |
3820924 |
agaaattatggacccgaattgaagtaccgcccgaaat |
3820888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 16700203 - 16699885
Alignment:
| Q |
19 |
caccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccgaa |
118 |
Q |
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||||| |||||||| ||||||||||||| |||| || |||||||||| ||||||||||||| || |||||||||||| ||||||||||| | |||||| |
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| T |
16700203 |
caccaacaacaaaacaaaactgcaatcagcaaaagatgacaaaaccctaataaaatgaaaggctaatccaaccccaccatagagaaattattgtcccgaa |
16700104 |
T |
|
| Q |
119 |
ttgaagtaccgccggaaattgttcaagtaacggccccattatttgacaaatccaactacaatctctg--caaaatccgtattaacatcgcgaacgcgcga |
216 |
Q |
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| T |
16700103 |
tcgaagtaccgtcggaaatttttcaagtatcggtcccattacctgacaaatccaactacaatccatgcacacaatctgtattaacatcgggaacgcgcga |
16700004 |
T |
|
| Q |
217 |
gaaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaacaaccatggaagagttggatct |
316 |
Q |
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||| |||| || ||||||||||| | |||||| ||| |||||| | || ||||||||||| || |||| ||| || |||||| ||||||||||| |
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| T |
16700003 |
aaaagccatccagcaaagtcttcttgaggtagcttttgaattataatacacaatccgacataaattcctaaatcaaaccacccatggtggagttggatct |
16699904 |
T |
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| Q |
317 |
agcgcaaataacccctcct |
335 |
Q |
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||||||||| ||||||||| |
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| T |
16699903 |
agcgcaaatcacccctcct |
16699885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 29273427 - 29273130
Alignment:
| Q |
18 |
ccaccagcaacaaaataaaactgcaatcaacaaatgaagacaaaacccatataaaatgaaaggtaaaaccaaccccaccacagagaaattatggacccga |
117 |
Q |
| |
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|||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |||||||||||| ||||||||||||||||| |
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| T |
29273427 |
ccaccaacaacaaaacgaaactgcaatcaacaaaagaagacaaaacccatacaaaatgaaaggcaaatctaaccccaccacaaagaaattatggacccga |
29273328 |
T |
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| Q |
118 |
attgaagtaccgccggaaattgttcaagtaacggccccattatttgacaaatccaactacaatctctgcaaaatccgtattaacatcgcgaacgcgcgag |
217 |
Q |
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||| |||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||||| |
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| T |
29273327 |
att---------------------caagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcgaa |
29273249 |
T |
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| Q |
218 |
aaatccatacaaagaagtcttcttggagcagctttcgaaaaataatagaaaaaccgacataaatccccaaattaaaac-aaccatggaagagttggatct |
316 |
Q |
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||| ||||||||||||||||||||| ||||||||| ||| |||| | | |||| |||||||||||||||| | ||| |||| | ||||||||||| |
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| T |
29273248 |
aaagccatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatct |
29273149 |
T |
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