View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3324_low_5 (Length: 280)
Name: NF3324_low_5
Description: NF3324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3324_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 6101836 - 6101582
Alignment:
| Q |
9 |
agcagagacatcaggatccgaaatcaaatacgccaatgctctcgccgcctccgcctgagtaccaccaccagcatccttcacaaccgcaacagaatcaagc |
108 |
Q |
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| T |
6101836 |
agcagaaacatcaggatccgaaatcaaatacgccaatgctctcgccgcctccgcctgagtaccaccaccagcatccttcacaaccgcaacagaatcaagc |
6101737 |
T |
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| Q |
109 |
aaccaatccacaaccgcaccgccaccagcacccacaatcgccgctctccggctcgaattcgccgcagaaatatctgccagcaacgccgccacacgaatct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6101736 |
aaccaatccacaaccgcaccgccaccagcacccacaatcgccgctctccggctcgaattcgccgcagaaatatctgccagcaacgccgccacgcgaatct |
6101637 |
T |
|
| Q |
209 |
cgaatccagaccgaacctcgtggttcgcggaagataacaccgaccttagcgactg |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6101636 |
cgaatccagaccgaacctcgtggttcgcggaagataacaccgaccttagcgactg |
6101582 |
T |
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