View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3325_low_2 (Length: 481)
Name: NF3325_low_2
Description: NF3325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3325_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 150 - 305
Target Start/End: Original strand, 4702696 - 4702852
Alignment:
| Q |
150 |
atttgcattgtttagtgaaaca--gtggaatagcaagatgtcagaggctgattctgccatatgcaaaaagaaaaggaaatctgagtggtcaagtatgcct |
247 |
Q |
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| T |
4702696 |
atttgcattgtttagtgcaacaaagcggaatagcaagatgtcagaggctgattctgccatatgcaaaaagaaaaggaatggagagtggtcaaatatgcct |
4702795 |
T |
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| Q |
248 |
tatgatctgctctcaaatattgcaaatatgctagaactgattgatttttaccagtttt |
305 |
Q |
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| T |
4702796 |
tatgatctgctctcaaatattgcaaataggctggaactgattga-ttttaccagtttt |
4702852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 4706069 - 4706222
Alignment:
| Q |
150 |
atttgcattgtttagtgaaaca--gtggaatagcaagatgtcagaggctgattctgccatatgcaaaaagaaaaggaaatctgagtggtcaagtatgcct |
247 |
Q |
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| T |
4706069 |
atttacattgtttagttaaacaaagtggaataccaagatgtcggaggttgattctgccatctgcaaaatgaaa--gaa----gagtggtcatgtgtaact |
4706162 |
T |
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| Q |
248 |
tatgatctgctctcaaatattgcaaatatgctagaactgattgatttttaccagttttcat |
308 |
Q |
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| T |
4706163 |
tatgatctgctgtcaaatattgcaaataggctggaactgattga-ttttacctgttttcat |
4706222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 4706506 - 4706558
Alignment:
| Q |
333 |
atgactgtattgcagcattttcatctgctcctacatctcaggattgcattgtt |
385 |
Q |
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| T |
4706506 |
atgactatattgcagcaatttcatctgctcccacatctcaggattgtattgtt |
4706558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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