View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3326_low_1 (Length: 619)
Name: NF3326_low_1
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3326_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 6 - 601
Target Start/End: Complemental strand, 25356028 - 25355427
Alignment:
| Q |
6 |
ggacgttggattgaagaacaagatcgacaaaacgaggaactaagaaatgcattgcaaactaattcatctgatatacaacttcatctacttgttgagagta |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25356028 |
ggacgttggattgaagaacaagatcgacaaaacgaggaactaagaaatgcattgcaaactaatgcatctgatatacaacttcatctacttgttgagagta |
25355929 |
T |
|
| Q |
106 |
gcttgaaccaatactcaaatcttttcagaatgaaagctgaagctgcaaaggctgatgttttctatttaatctctggcgtatggaaatcaccggtcgaacg |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355928 |
gcttgaaccaatactcaaatcttttcagaatgaaagctgaagctgcaaaggctgatgttttctatttaatctctggcgtatggaaatcaccggtcgaacg |
25355829 |
T |
|
| Q |
206 |
cctttttctttggatcggaggatctcgtccatcacaaattctaaatgtacatccactaattactattatctcatttttatattttatgttcattaatttt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25355828 |
cctttttctttggatcggaggatctcgtccatcacaaattctaaatgtacatccactaattactattatctcatttttatattttctgttcattaatttt |
25355729 |
T |
|
| Q |
306 |
gcaaaatataggagctttatataatcttaatttgttgaaattttgttgatatattcttgatcattctttatcagtagcttatag-aactagcatcaactc |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25355728 |
gcaaaatataggagctttatataatcttaatttgttgaaattttgttaatatattcttgatcattctttatcagtagcttatagaaactagcatcaactc |
25355629 |
T |
|
| Q |
405 |
atctcgagg-----ttatatggtcatacttttaccactgagccgacaaatcataaacgtgtgttgactagagacgaggagtactaatggcataaattttg |
499 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355628 |
atctcgaggttatattatatggtcgtacttttaccactgagccgacaaatcataaacgcgtgttgactagagacgaggagtactaatggcataaattttg |
25355529 |
T |
|
| Q |
500 |
ttctatgttttgtaaattgttaaacatcatgtcatgtcatataaacctcaggacatgtttctatagcgtcgattgatacatgtaataacctatcaatgat |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355528 |
ttctatgttttgtaaattgttaaacatcatgtcatgtcatataaacctcaggacatgtttctatagcgtcgattgatacatgtaataacctatcaatgat |
25355429 |
T |
|
| Q |
600 |
tt |
601 |
Q |
| |
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|| |
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|
| T |
25355428 |
tt |
25355427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 25348417 - 25348158
Alignment:
| Q |
6 |
ggacgttggattgaagaacaagatcgacaaaacgaggaactaagaaatgcattgcaaactaattcatctgatatacaacttcatctacttgttgagagta |
105 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||| | |||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
25348417 |
ggacgctggattgaagagcaagatagacaaaacaaagaactaagaaatgctttgcataataatgcatctgatatacaacttcatctacttgttgagagta |
25348318 |
T |
|
| Q |
106 |
gcttgaaccaatactcaaatcttttcagaatgaaagctgaagctgcaaaggctgatgttttctatttaatctctggcgtatggaaatcaccggtcgaacg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||| |
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|
| T |
25348317 |
gcttgaaccaatactcaaatcttttcagaatgaaagcagaagctgcaaagactgatgttttctatttaatctctggcgtatggaagaagccgttagaacg |
25348218 |
T |
|
| Q |
206 |
cctttttctttggatcggaggatctcgtccatcacaaattctaaatgtacatccactaat |
265 |
Q |
| |
|
||||||||||||| | ||||||| | ||||||||| |||||||||||||||||||||| |
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|
| T |
25348217 |
cctttttctttggtttggaggataccatccatcacagcttctaaatgtacatccactaat |
25348158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 25350610 - 25350351
Alignment:
| Q |
6 |
ggacgttggattgaagaacaagatcgacaaaacgaggaactaagaaatgcattgcaaactaattcatctgatatacaacttcatctacttgttgagagta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
25350610 |
ggacgttggattgaagaacaagatcgacaaaacgaagaactaagaaatgcattgcaaactaatgcatctgatatacaacttcatctacttgtcgagagta |
25350511 |
T |
|
| Q |
106 |
gcttgaaccaatactcaaatcttttcagaatgaaagctgaagctgcaaaggctgatgttttctatttaatctctggcgtatggaaatcaccggtcgaacg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||| |||||| ||| | ||||| |
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| T |
25350510 |
gcttgaaccaatactcaaatcttttcagaatgaaagcagaagctgcaaagattgattctttatatttaatctctggcgcatggaagaagccgttagaacg |
25350411 |
T |
|
| Q |
206 |
cctttttctttggatcggaggatctcgtccatcacaaattctaaatgtacatccactaat |
265 |
Q |
| |
|
||||||||||||| | |||||||| |||| ||||| ||||||| |||||||||||||| |
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|
| T |
25350410 |
cctttttctttggtttggaggatcctgtccgtcacagcttctaaacgtacatccactaat |
25350351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 33171379 - 33171171
Alignment:
| Q |
48 |
agaaatgcattgcaaactaattcatctgatatacaacttcatctacttgttgagagtagcttgaaccaatactcaaatcttttcagaatgaaagctgaag |
147 |
Q |
| |
|
||||||||||| ||||||||| | || || | || || | |||| ||||| ||||| |||||| || ||||| ||||||||||||||||| | || | |
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| T |
33171379 |
agaaatgcatttcaaactaatgcgtccgaagtgcagctccgtctagttgttcagagtgtcttgaatcattactcggatcttttcagaatgaaaacggatg |
33171280 |
T |
|
| Q |
148 |
ctgcaaaggctgatgttttctatttaatctctggcgtatggaaatcaccggtcgaacgcctttttctttggatcggaggatctcgtccatcacaaattct |
247 |
Q |
| |
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|||||||||||||| ||||||||||||| || || |||||| || | || || || ||||| || ||||||||||||||||| |||||||| |||| |
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| T |
33171279 |
ctgcaaaggctgatcccctctatttaatctccggtgtgtggaaaccatccgtagagcgacttttcctatggatcggaggatctcggccatcacagcttct |
33171180 |
T |
|
| Q |
248 |
aaatgtaca |
256 |
Q |
| |
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||||||||| |
|
|
| T |
33171179 |
aaatgtaca |
33171171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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