View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3326_low_11 (Length: 236)

Name: NF3326_low_11
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3326_low_11
NF3326_low_11
[»] chr8 (4 HSPs)
chr8 (9-221)||(12188767-12188979)
chr8 (9-221)||(12433195-12433407)
chr8 (127-221)||(12177446-12177541)
chr8 (127-221)||(12421874-12421969)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 12188979 - 12188767
Alignment:
Q  9 taatttttattattctatttgctatttctttcttggttataaaatggatacaaattttcttgaattatattgtatcctctaattattaactaatttatag 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12188979 taatttttattattctacttgctatttctttcttggttataaaatggatacaaattttcttgaattatattgtatcctctaattattaactaatttatag 12188880  T
Q  109 aatccttttatattctaacatttatcgtattcttatattttaggactgaatctgacttgattggagtcatcatcaaagcagttctccaaaaattgaatca 208  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12188879 aatccttttatactctaacatttatcgtattcttatattttaggactgaatctgacttgattggagacatcatcaaagcagttctccaaaaattgaatca 12188780  T
Q  209 aaagtatacaaat 221  Q
    |||||||||||||    
T  12188779 aaagtatacaaat 12188767  T

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Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 12433407 - 12433195
Alignment:
Q  9 taatttttattattctatttgctatttctttcttggttataaaatggatacaaattttcttgaattatattgtatcctctaattattaactaatttatag 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12433407 taatttttattattctacttgctatttctttcttggttataaaatggatacaaattttcttgaattatattgtatcctctaattattaactaatttatag 12433308  T
Q  109 aatccttttatattctaacatttatcgtattcttatattttaggactgaatctgacttgattggagtcatcatcaaagcagttctccaaaaattgaatca 208  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12433307 aatccttttatactctaacatttatcgtattcttatattttaggactgaatctgacttgattggagacatcatcaaagcagttctccaaaaattgaatca 12433208  T
Q  209 aaagtatacaaat 221  Q
    |||||||||||||    
T  12433207 aaagtatacaaat 12433195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 12177541 - 12177446
Alignment:
Q  127 catttatc-gtattcttatattttaggactgaatctgacttgattggagtcatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaat 221  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  12177541 catttatctgtattcttatattttaggactgaagctgacttgattggagacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaat 12177446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 12421969 - 12421874
Alignment:
Q  127 catttatc-gtattcttatattttaggactgaatctgacttgattggagtcatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaat 221  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  12421969 catttatctgtattcttatattttaggactgaagctgacttgattggagacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaat 12421874  T

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