View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3326_low_12 (Length: 232)

Name: NF3326_low_12
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3326_low_12
NF3326_low_12
[»] chr6 (8 HSPs)
chr6 (1-225)||(33141063-33141287)
chr6 (100-188)||(33135359-33135448)
chr6 (153-223)||(33135173-33135243)
chr6 (49-97)||(33135249-33135297)
chr6 (167-226)||(10760849-10760908)
chr6 (97-144)||(33135173-33135220)
chr6 (4-37)||(10285178-10285211)
chr6 (50-98)||(33135411-33135459)
[»] chr2 (2 HSPs)
chr2 (1-41)||(19613643-19613683)
chr2 (168-223)||(19613621-19613677)
[»] chr4 (1 HSPs)
chr4 (180-232)||(5654611-5654664)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33141287 - 33141063
Alignment:
Q  1 atgttattttctcaaattattattattgtcgacgtatatgtgtagcatgacacatgtgatcacattgaattacattattttcacaacttattatcagatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33141287 atgttattttctcaaattattattattgtcgacgtatatgtgtagcatgacacatgtgatcacattgaattacattattttcacaacttattaccagatc 33141188  T
Q  101 acattgaattacgttatttcacaacttattatcagtgtcgacgtgtcaatgtccgtttcagtgcatgacacatgtcatcacattgaatatgttagtttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33141187 acattgaattacgttatttcacaacttattatcagtgtcgacgtgtcaatgtccgtttcagtgcatgacacatgtcatcacattgaatatgttagtttct 33141088  T
Q  201 caaattattatcagtgtcgacgtgt 225  Q
    |||||||||||||||||||||||||    
T  33141087 caaattattatcagtgtcgacgtgt 33141063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 33135448 - 33135359
Alignment:
Q  100 cacattgaattacgttattt-cacaacttattatcagtgtcgacgtgtcaatgtccgtttcagtgcatgacacatgtcatcacattgaat 188  Q
    |||||||||||  ||||||| ||||| |||||||||| |||||| ||||| ||||| | ||| |||||||| ||||| ||||||||||||    
T  33135448 cacattgaattgtgttattttcacaaattattatcagagtcgacatgtcagtgtccctgtcactgcatgacccatgtgatcacattgaat 33135359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 33135243 - 33135173
Alignment:
Q  153 ccgtttcagtgcatgacacatgtcatcacattgaa-tatgttagtttatcaaattattatcagtgtcgacgt 223  Q
    |||| |||||||||||||||| | ||||||||||| ||||||| ||| |||||| |||||||||||||||||    
T  33135243 ccgtgtcagtgcatgacacatatgatcacattgaattatgtta-tttctcaaatcattatcagtgtcgacgt 33135173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 33135297 - 33135249
Alignment:
Q  49 gacacatgtgatcacattgaattacattattttcacaacttattatcag 97  Q
    |||| |||||||||||||||||||  |||||||||||| ||||||||||    
T  33135297 gacaaatgtgatcacattgaattatgttattttcacaaattattatcag 33135249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 10760849 - 10760908
Alignment:
Q  167 gacacatgtcatcacattgaatatgttagtttatcaaattattatcagtgtcgacgtgtc 226  Q
    ||||| ||| || ||||| ||||||| | ||| |||||||||||||||||||||||||||    
T  10760849 gacacgtgtgattacattcaatatgtcattttctcaaattattatcagtgtcgacgtgtc 10760908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 33135220 - 33135173
Alignment:
Q  97 gatcacattgaattacgttatttcacaacttattatcagtgtcgacgt 144  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||||||    
T  33135220 gatcacattgaattatgttatttctcaaatcattatcagtgtcgacgt 33135173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 10285178 - 10285211
Alignment:
Q  4 ttattttctcaaattattattattgtcgacgtat 37  Q
    ||||||||||||| ||||||||||||||||||||    
T  10285178 ttattttctcaaagtattattattgtcgacgtat 10285211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 33135459 - 33135411
Alignment:
Q  50 acacatgtgatcacattgaattacattattttcacaacttattatcaga 98  Q
    |||||||||| |||||||||||   |||||||||||| |||||||||||    
T  33135459 acacatgtgaacacattgaattgtgttattttcacaaattattatcaga 33135411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19613643 - 19613683
Alignment:
Q  1 atgttattttctcaaattattattattgtcgacgtatatgt 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  19613643 atgttattttctcaaattattatgagtgtcgacgtatatgt 19613683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 19613621 - 19613677
Alignment:
Q  168 acacatgtcatcacattgaat-atgttagtttatcaaattattatcagtgtcgacgt 223  Q
    |||||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||||    
T  19613621 acacatatcattacattgaattatgttattttctcaaattattatgagtgtcgacgt 19613677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 5654611 - 5654664
Alignment:
Q  180 acattgaat-atgttagtttatcaaattattatcagtgtcgacgtgtctgtgct 232  Q
    ||||||||| |||| | ||| |||||||||||||||||||||| ||||||||||    
T  5654611 acattgaattatgtcattttctcaaattattatcagtgtcgacatgtctgtgct 5654664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University