View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3326_low_2 (Length: 490)
Name: NF3326_low_2
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3326_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 13466831 - 13466351
Alignment:
| Q |
1 |
gctagctacctattaagtaaattaacactagaaccgttacttaagagtattagccacatcaatgacaaatcggtatttaacatcattctttgcaagtctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13466831 |
gctagctacctattaagtaaattaacactagaaccgttacttaagagtattagccacatcaatgacaaatcggtatttaacatcattctttgcaagtctc |
13466732 |
T |
|
| Q |
101 |
tcaaaagcagtgttcacataatccattgaaatcacttcaatatctgctgtgatattgtgcttagctgcaaaatcaatcatgtcttggctctctttcattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13466731 |
tcaaaagcagtgttcacataatccattgaaatcacttcaatatctgctgtaatattgtgctttgctgcaaaatcaatcatgtcttggctctctttcattc |
13466632 |
T |
|
| Q |
201 |
ctccaccagcactacctgcaattatcttcctccctaatttnnnnnnnnnnngattcttaattagttccaagcagaaattaatcaagagtaaaaataatta |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13466631 |
ctcccccagcactacctgcaattatcttcctccctaattt---aaaaaaatgattcttaattagttccaagcagaaattaatcaagagttaaaataatta |
13466535 |
T |
|
| Q |
301 |
tcaagcattacaaggttatttataatttaccagacattaaaggcatatatggcaagataggaggtgtaactgatgcaccaactaaaatcaatttgccaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13466534 |
tcaagcattacaaggttatttataatttaccagacattaaaggcatatatggcaagataggaggtgtaactgatgcaccaactaaaattaatttgccaca |
13466435 |
T |
|
| Q |
401 |
tgtcttcaacatttcaattaatgggtggagtgaatgagggcctgaaactgtgtctatgatgccgtccattgtgtcctttgcttc |
484 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13466434 |
tgtcttcaacatttcaattaatgggtagagtgaatgagggcctgaaactgtgtctatgatgccgtccattgtgtcctttgcttc |
13466351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 13394427 - 13394332
Alignment:
| Q |
110 |
gtgttcacataatccattgaaatcacttcaatatctgctgtgatattgtgcttagctgcaaaatcaatcatgtcttggctctctttcattcctcca |
205 |
Q |
| |
|
||||| |||||||||| || || ||||| || |||| | | |||||||| ||||| |||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
13394427 |
gtgttaacataatccactggtatgacttcgatgtctggttttatattgtgtttagcagcaaaatcaatcatttcttgtgtctctttcatgcctcca |
13394332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University