View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3326_low_3 (Length: 487)
Name: NF3326_low_3
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3326_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 14462517 - 14462144
Alignment:
| Q |
18 |
acttcaaacatatacattatggtatgaaaataaagaaaatggaaacatttcaaatgcaaaatccaaaatctaatgagaaggcaaccaaataagacgacta |
117 |
Q |
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| T |
14462517 |
acttcaaacatatacattatggtatgaaaataaagaaaatggaaacatttcaaatgcaaaatccaaaatctaatgagaaggcaaccaaataaa--gacta |
14462420 |
T |
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| Q |
118 |
tatatatgacaaacacacgtagagaataaattaaaccaatcacaaccgggagacaagattaacatgttgatatcatatcatatcatatatagaaaacaac |
217 |
Q |
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| T |
14462419 |
tatatatgacagacacacgtagagaataaattaaaccaatcacaaccgggagacaagattaacatgttgatatcatatcatat-------agaaaacaac |
14462327 |
T |
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| Q |
218 |
aataagcaaatacacatactaacaacaacaaaagagtgatatttatggactggaataattaaataatctatatgataatagttatnnnnnnncaaaggtt |
317 |
Q |
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| T |
14462326 |
aataagcaaatacacatactaacaacaacaaaagagtgatatttatggactggaataaataaataatctatatgataatagttat-aagaaacaaaggtt |
14462228 |
T |
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| Q |
318 |
tcacaaattaaatacataatttagatccgccaggcaaacaaaagacctcacaatataaaagaaagattttgataaatatatata |
401 |
Q |
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| T |
14462227 |
tcacaaattaaatacataagttagatccgccaggcaaacaaaagacctcacaatataaaagaaagattttgatacatatatata |
14462144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 403 - 477
Target Start/End: Complemental strand, 14462052 - 14461978
Alignment:
| Q |
403 |
aaatataagataaaggacttcaacaaatttgtcaagcttgttggcttgtagatcttgtttttcgttttccctttg |
477 |
Q |
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| T |
14462052 |
aaatataagataaaggacttcaacaaatttgtcaagcttgttggcttgtagatcttgtttttcgttttccctttg |
14461978 |
T |
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