View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3326_low_5 (Length: 371)
Name: NF3326_low_5
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3326_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 135 - 301
Target Start/End: Original strand, 46816415 - 46816581
Alignment:
| Q |
135 |
ttcactgtatttttatggatggaaaaattatttaacccataaacataagatttatttattagacagatgcattaaaaaatctttaagtttaacgtattta |
234 |
Q |
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| T |
46816415 |
ttcactatatttttatggatggaaaaatcatttaacccataaacataagatttatttattagacagatgcatctaaagatctttaattttaacgtattta |
46816514 |
T |
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| Q |
235 |
tcagatagtcttttaagnnnnnnnaattttaacttagtcatttaagtcacataatgtttttcattac |
301 |
Q |
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| T |
46816515 |
tcagatagtcttttaaatttttttaattttaaattagtcatttaagtcacataatgtttttcattac |
46816581 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 46816295 - 46816347
Alignment:
| Q |
15 |
aatttagacacatgtcagacataaaaatatgtcataaatttgatattaacatg |
67 |
Q |
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| T |
46816295 |
aatttagacacatctcagacataaaaatatgtcataaatttgatattaacatg |
46816347 |
T |
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