View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3326_low_6 (Length: 356)
Name: NF3326_low_6
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3326_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 22507201 - 22507530
Alignment:
| Q |
8 |
cgaagaatatccataaaaagagattgatgataagataacaataccaaagaatacatacattcaatttctgtcgaagggctttgtaaacttgctgccnnnn |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22507201 |
cgaacaatatccataaaaagagattgatgataagataacaataccaaagaatacatacattcaatttctgtcgaagggctttgtaaacttgctgcctttt |
22507300 |
T |
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| Q |
108 |
nnnnnnnnnnnnnnnnnnnnncgcatatagcatccttagatcatcaattgattcggaatacctacagagagaaaccaaaaataatgaaaagcatcattca |
207 |
Q |
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| T |
22507301 |
tataatttttcgttcttttttcgcatatagcatccttagatcatcaattgattcggaatacctacagagggaaaccaaaaataatgaaaagcatcattca |
22507400 |
T |
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| Q |
208 |
atgtgcatgagtatagagtgcgtgtgtgagagagaaagagaagcttcttctagcatgttgtaatatgataatgtgaatcaatagtctaatgccgtgcctt |
307 |
Q |
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|||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22507401 |
atgtgcatgattatagagagcgtgtgtgtgagagaaagagaagcttcttctagcatgttgtaatatgataatgagaatcaatagtctaatgccgtgcctt |
22507500 |
T |
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| Q |
308 |
ttgctctcacgcttaagtgtatgatttaga |
337 |
Q |
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|||||||||||| ||||||| ||||||||| |
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| T |
22507501 |
ttgctctcacgcctaagtgtgtgatttaga |
22507530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 13423412 - 13423347
Alignment:
| Q |
38 |
taagataacaataccaaagaatacatacattcaatttctgtcgaagggctttgtaaacttgctgcc |
103 |
Q |
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|||||| |||| |||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
13423412 |
taagatgacaaaaccaaataatacatacattcagtttctgtcgaagggttttgtaaacttgctgcc |
13423347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 13423115 - 13423049
Alignment:
| Q |
271 |
tatgataatgtgaatcaatagtctaatgccgtgccttttgctctcacgcttaagtgtatgatttaga |
337 |
Q |
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||||||||||||||||||||||||| || | |||||| |||||||||| ||||||||||||||||| |
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| T |
13423115 |
tatgataatgtgaatcaatagtctagtgtcatgccttcggctctcacgcctaagtgtatgatttaga |
13423049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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