View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3326_low_8 (Length: 279)
Name: NF3326_low_8
Description: NF3326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3326_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 33141273 - 33141525
Alignment:
| Q |
1 |
ttgagaaaataacataattcaatatgctcacatgtgtcatgctgtgttggtgtcggacactgacacatgtccagtacacacttcaatgtggtcatatgtg |
100 |
Q |
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| T |
33141273 |
ttgagaaaataacataattcaatatgctcacatgtgtcatgctgtgttggtgtcggacactgacacatgtccagtacacacttcaatgtggtcatatgtg |
33141372 |
T |
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| Q |
101 |
tcatgctgtgtcagtgttggacacggagatgtgtttagtccgaccttctatcagaagtgttggtgctgcaaagttagatagcttgatgtgtaggtgttgg |
200 |
Q |
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| T |
33141373 |
----------tcagtgttggacacggagatgtgtttagtccgaccttctatcagaagtgttggtgctgcaaagttagatagcttgatgtgtaggtgttgg |
33141462 |
T |
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| Q |
201 |
aagacggtgttgaaaagcgtgatgattggttaagttaagtagataattgattaagtgtgtgtt |
263 |
Q |
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| T |
33141463 |
aagacggtgttgaaaagcgtgatgattggttaagttaagtagataattgattaagtgtgtgtt |
33141525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 33141673 - 33141734
Alignment:
| Q |
143 |
accttctatcagaagtgttggtgctgcaaagttagatagcttgatgtgtaggtgttggaaga |
204 |
Q |
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| T |
33141673 |
accttccatcaaaagtgtcggtgctatagagttagatagcttgatgtgtaggtggtggaaga |
33141734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 33135921 - 33136032
Alignment:
| Q |
150 |
atcagaagtgttggtgctgcaaagttagatagcttgatgtgtaggtgttggaagacggtgttg--aaaagcgtgatgattggttaagttaagtagataat |
247 |
Q |
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| T |
33135921 |
atcagaagtgtcggtgctatagggttagata--ttgatgtgtaggtattcgaagaaggtatttgaaaaagggtgatgattggttaagttaattagataac |
33136018 |
T |
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| Q |
248 |
tgattaagtgtgtg |
261 |
Q |
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| T |
33136019 |
tggttaggtgtgtg |
33136032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 33135662 - 33135714
Alignment:
| Q |
153 |
agaagtgttggtgctgcaaagttagata--gcttgatgtgtaggtgttggaag |
203 |
Q |
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| T |
33135662 |
agaagtgtaagtgctacaaagttagatatagcttgatgtgtaggtgttggaag |
33135714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 33136295 - 33136363
Alignment:
| Q |
172 |
agttagatagcttgatgtgtaggtgttggaagacggt-gttgaaaa-gcgtgatgattggttaagttaa |
238 |
Q |
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| T |
33136295 |
agttaggtagcttgatgtctaggtgttggaagaaggtggttcaaaatgtgtgatgattggtttagttaa |
33136363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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